Strain Fitness in Variovorax sp. SCN45 around GFF2446

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2444 and GFF2445 are separated by 188 nucleotidesGFF2445 and GFF2446 are separated by 115 nucleotidesGFF2446 and GFF2447 are separated by 34 nucleotides GFF2444 - Integral membrane protein, interacts with FtsH, at 497,646 to 498,341 GFF2444 GFF2445 - no description, at 498,530 to 498,898 GFF2445 GFF2446 - FIG00956403: hypothetical protein, at 499,014 to 501,233 GFF2446 GFF2447 - beta-lactamase-like protein, at 501,268 to 502,593 GFF2447 Position (kb) 499 500 501 502Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.124 kb on + strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.125 kb on - strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.256 kb on + strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.257 kb on - strand, within GFF2444at 498.320 kb on - strandat 498.885 kb on + strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.886 kb on - strandat 498.914 kb on - strandat 498.914 kb on - strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.930 kb on + strandat 498.931 kb on - strandat 498.931 kb on - strandat 498.931 kb on - strandat 498.942 kb on + strandat 498.942 kb on + strandat 499.115 kb on + strandat 499.116 kb on - strandat 499.348 kb on + strand, within GFF2446at 499.348 kb on + strand, within GFF2446at 499.348 kb on + strand, within GFF2446at 499.348 kb on + strand, within GFF2446at 499.348 kb on + strand, within GFF2446at 499.349 kb on - strand, within GFF2446at 499.349 kb on - strand, within GFF2446at 499.349 kb on - strand, within GFF2446at 499.411 kb on + strand, within GFF2446at 499.412 kb on - strand, within GFF2446at 499.412 kb on - strand, within GFF2446at 499.546 kb on + strand, within GFF2446at 499.546 kb on + strand, within GFF2446at 499.753 kb on + strand, within GFF2446at 499.753 kb on + strand, within GFF2446at 499.753 kb on + strand, within GFF2446at 499.753 kb on + strand, within GFF2446at 499.754 kb on - strand, within GFF2446at 499.754 kb on - strand, within GFF2446at 499.913 kb on - strand, within GFF2446at 499.913 kb on - strand, within GFF2446at 499.913 kb on - strand, within GFF2446at 499.954 kb on + strand, within GFF2446at 499.954 kb on + strand, within GFF2446at 499.954 kb on + strand, within GFF2446at 499.954 kb on + strand, within GFF2446at 499.954 kb on + strand, within GFF2446at 499.955 kb on - strand, within GFF2446at 499.955 kb on - strand, within GFF2446at 500.389 kb on + strand, within GFF2446at 500.431 kb on + strand, within GFF2446at 500.431 kb on + strand, within GFF2446at 500.432 kb on - strand, within GFF2446at 500.432 kb on - strand, within GFF2446at 500.483 kb on - strand, within GFF2446at 500.483 kb on - strand, within GFF2446at 500.483 kb on - strand, within GFF2446at 500.665 kb on + strand, within GFF2446at 500.665 kb on + strand, within GFF2446at 500.665 kb on + strand, within GFF2446at 500.665 kb on + strand, within GFF2446at 500.665 kb on + strand, within GFF2446at 500.665 kb on + strand, within GFF2446at 500.666 kb on - strand, within GFF2446at 500.666 kb on - strand, within GFF2446at 500.666 kb on - strand, within GFF2446at 500.666 kb on - strand, within GFF2446at 500.755 kb on + strand, within GFF2446at 500.848 kb on + strand, within GFF2446at 500.848 kb on + strand, within GFF2446at 500.849 kb on - strand, within GFF2446at 500.888 kb on - strand, within GFF2446at 501.641 kb on + strand, within GFF2447at 501.641 kb on + strand, within GFF2447at 501.641 kb on + strand, within GFF2447at 501.641 kb on + strand, within GFF2447at 501.641 kb on + strand, within GFF2447at 501.641 kb on + strand, within GFF2447at 501.642 kb on - strand, within GFF2447at 501.735 kb on - strand, within GFF2447at 502.113 kb on - strand, within GFF2447

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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498,124 + GFF2444 0.69 -0.7
498,124 + GFF2444 0.69 -0.1
498,124 + GFF2444 0.69 -0.1
498,124 + GFF2444 0.69 +1.3
498,124 + GFF2444 0.69 -0.1
498,124 + GFF2444 0.69 -0.0
498,124 + GFF2444 0.69 -0.5
498,124 + GFF2444 0.69 -0.1
498,125 - GFF2444 0.69 -0.6
498,125 - GFF2444 0.69 -0.4
498,125 - GFF2444 0.69 -0.7
498,125 - GFF2444 0.69 +0.8
498,125 - GFF2444 0.69 -0.3
498,125 - GFF2444 0.69 +1.1
498,125 - GFF2444 0.69 -0.7
498,125 - GFF2444 0.69 +0.3
498,125 - GFF2444 0.69 -0.9
498,125 - GFF2444 0.69 +0.1
498,125 - GFF2444 0.69 +0.1
498,125 - GFF2444 0.69 +0.2
498,256 + GFF2444 0.88 +0.3
498,256 + GFF2444 0.88 -0.2
498,256 + GFF2444 0.88 +0.2
498,256 + GFF2444 0.88 +0.2
498,256 + GFF2444 0.88 -2.5
498,256 + GFF2444 0.88 -0.4
498,256 + GFF2444 0.88 +0.2
498,256 + GFF2444 0.88 +0.3
498,256 + GFF2444 0.88 -0.0
498,256 + GFF2444 0.88 +0.3
498,256 + GFF2444 0.88 -0.3
498,256 + GFF2444 0.88 -0.4
498,257 - GFF2444 0.88 -1.1
498,257 - GFF2444 0.88 +0.5
498,257 - GFF2444 0.88 +0.3
498,257 - GFF2444 0.88 +0.0
498,257 - GFF2444 0.88 -0.3
498,257 - GFF2444 0.88 +0.1
498,257 - GFF2444 0.88 +0.5
498,257 - GFF2444 0.88 -0.4
498,257 - GFF2444 0.88 +0.7
498,257 - GFF2444 0.88 +0.1
498,257 - GFF2444 0.88 +0.2
498,257 - GFF2444 0.88 +0.0
498,320 - +1.0
498,885 + -0.9
498,886 - -0.8
498,886 - -0.5
498,886 - +0.2
498,886 - +0.7
498,886 - +0.1
498,914 - +0.1
498,914 - -0.1
498,930 + +0.2
498,930 + +0.0
498,930 + +0.7
498,930 + +0.0
498,931 - -2.3
498,931 - -0.6
498,931 - -0.1
498,942 + +0.5
498,942 + +0.3
499,115 + +0.5
499,116 - -0.7
499,348 + GFF2446 0.15 -0.1
499,348 + GFF2446 0.15 +1.1
499,348 + GFF2446 0.15 +0.0
499,348 + GFF2446 0.15 -0.3
499,348 + GFF2446 0.15 +0.9
499,349 - GFF2446 0.15 -0.2
499,349 - GFF2446 0.15 -0.0
499,349 - GFF2446 0.15 -1.5
499,411 + GFF2446 0.18 +0.3
499,412 - GFF2446 0.18 -0.7
499,412 - GFF2446 0.18 +0.5
499,546 + GFF2446 0.24 +0.1
499,546 + GFF2446 0.24 -1.1
499,753 + GFF2446 0.33 +0.5
499,753 + GFF2446 0.33 -0.1
499,753 + GFF2446 0.33 +0.2
499,753 + GFF2446 0.33 +0.0
499,754 - GFF2446 0.33 -0.5
499,754 - GFF2446 0.33 -0.1
499,913 - GFF2446 0.40 +0.3
499,913 - GFF2446 0.40 -0.5
499,913 - GFF2446 0.40 +0.2
499,954 + GFF2446 0.42 -0.1
499,954 + GFF2446 0.42 -0.2
499,954 + GFF2446 0.42 -0.4
499,954 + GFF2446 0.42 +0.7
499,954 + GFF2446 0.42 -0.3
499,955 - GFF2446 0.42 -0.0
499,955 - GFF2446 0.42 -0.6
500,389 + GFF2446 0.62 -0.2
500,431 + GFF2446 0.64 -0.5
500,431 + GFF2446 0.64 -0.1
500,432 - GFF2446 0.64 +0.1
500,432 - GFF2446 0.64 -0.4
500,483 - GFF2446 0.66 -0.3
500,483 - GFF2446 0.66 -0.2
500,483 - GFF2446 0.66 +0.2
500,665 + GFF2446 0.74 +0.9
500,665 + GFF2446 0.74 -0.1
500,665 + GFF2446 0.74 +0.9
500,665 + GFF2446 0.74 +1.0
500,665 + GFF2446 0.74 -0.1
500,665 + GFF2446 0.74 -0.1
500,666 - GFF2446 0.74 +1.9
500,666 - GFF2446 0.74 -0.4
500,666 - GFF2446 0.74 +4.0
500,666 - GFF2446 0.74 -0.3
500,755 + GFF2446 0.78 -0.4
500,848 + GFF2446 0.83 -1.3
500,848 + GFF2446 0.83 +0.6
500,849 - GFF2446 0.83 +0.6
500,888 - GFF2446 0.84 +0.4
501,641 + GFF2447 0.28 -0.1
501,641 + GFF2447 0.28 +0.3
501,641 + GFF2447 0.28 -0.3
501,641 + GFF2447 0.28 -0.4
501,641 + GFF2447 0.28 +0.9
501,641 + GFF2447 0.28 -0.3
501,642 - GFF2447 0.28 +0.1
501,735 - GFF2447 0.35 -0.3
502,113 - GFF2447 0.64 +0.3

Or see this region's nucleotide sequence