Strain Fitness in Variovorax sp. SCN45 around GFF2441

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2439 and GFF2440 are separated by 19 nucleotidesGFF2440 and GFF2441 are separated by 143 nucleotidesGFF2441 and GFF2442 are separated by 10 nucleotides GFF2439 - no description, at 490,900 to 491,910 GFF2439 GFF2440 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 491,930 to 492,406 GFF2440 GFF2441 - RND efflux system, inner membrane transporter, at 492,550 to 495,678 GFF2441 GFF2442 - RND efflux system, membrane fusion protein, at 495,689 to 496,840 GFF2442 Position (kb) 492 493 494 495 496Strain fitness (log2 ratio) -2 -1 0 1 2at 491.567 kb on + strand, within GFF2439at 491.567 kb on + strand, within GFF2439at 492.033 kb on + strand, within GFF2440at 492.033 kb on + strand, within GFF2440at 492.033 kb on + strand, within GFF2440at 492.033 kb on + strand, within GFF2440at 492.033 kb on + strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.034 kb on - strand, within GFF2440at 492.252 kb on + strand, within GFF2440at 492.253 kb on - strand, within GFF2440at 492.253 kb on - strand, within GFF2440at 492.315 kb on + strand, within GFF2440at 492.315 kb on + strand, within GFF2440at 492.315 kb on + strand, within GFF2440at 492.315 kb on + strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.316 kb on - strand, within GFF2440at 492.374 kb on - strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.391 kb on - strandat 492.391 kb on - strandat 492.391 kb on - strandat 492.391 kb on - strandat 492.393 kb on + strandat 492.393 kb on + strandat 492.393 kb on + strandat 492.393 kb on + strandat 492.394 kb on - strandat 492.409 kb on + strandat 492.409 kb on + strandat 492.410 kb on - strandat 492.410 kb on - strandat 492.491 kb on - strandat 492.503 kb on + strandat 492.503 kb on + strandat 492.504 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.508 kb on - strandat 492.530 kb on + strandat 492.530 kb on + strandat 492.530 kb on + strandat 492.531 kb on - strandat 492.531 kb on - strandat 492.531 kb on - strandat 492.531 kb on - strandat 492.617 kb on + strandat 492.617 kb on + strandat 492.617 kb on + strandat 492.618 kb on - strandat 492.618 kb on - strandat 492.618 kb on - strandat 492.618 kb on - strandat 492.914 kb on + strand, within GFF2441at 492.914 kb on + strand, within GFF2441at 492.914 kb on + strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 492.915 kb on - strand, within GFF2441at 493.016 kb on + strand, within GFF2441at 493.016 kb on + strand, within GFF2441at 493.017 kb on - strand, within GFF2441at 493.017 kb on - strand, within GFF2441at 493.017 kb on - strand, within GFF2441at 493.101 kb on - strand, within GFF2441at 493.232 kb on + strand, within GFF2441at 493.233 kb on - strand, within GFF2441at 493.373 kb on + strand, within GFF2441at 493.373 kb on + strand, within GFF2441at 493.373 kb on + strand, within GFF2441at 493.373 kb on + strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.374 kb on - strand, within GFF2441at 493.375 kb on + strand, within GFF2441at 493.375 kb on + strand, within GFF2441at 493.375 kb on + strand, within GFF2441at 493.415 kb on + strand, within GFF2441at 493.415 kb on + strand, within GFF2441at 493.415 kb on + strand, within GFF2441at 493.416 kb on - strand, within GFF2441at 493.695 kb on - strand, within GFF2441at 493.695 kb on - strand, within GFF2441at 493.695 kb on - strand, within GFF2441at 493.838 kb on + strand, within GFF2441at 493.838 kb on + strand, within GFF2441at 493.839 kb on - strand, within GFF2441at 493.839 kb on - strand, within GFF2441at 493.839 kb on - strand, within GFF2441at 493.839 kb on - strand, within GFF2441at 493.899 kb on - strand, within GFF2441at 494.021 kb on + strand, within GFF2441at 494.021 kb on + strand, within GFF2441at 494.022 kb on - strand, within GFF2441at 494.022 kb on - strand, within GFF2441at 494.500 kb on + strand, within GFF2441at 494.500 kb on + strand, within GFF2441at 494.500 kb on + strand, within GFF2441at 494.500 kb on + strand, within GFF2441at 494.500 kb on + strand, within GFF2441at 494.500 kb on + strand, within GFF2441at 494.500 kb on + strand, within GFF2441at 494.501 kb on - strand, within GFF2441at 494.501 kb on - strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.609 kb on + strand, within GFF2441at 494.610 kb on - strand, within GFF2441at 494.610 kb on - strand, within GFF2441at 494.610 kb on - strand, within GFF2441at 494.703 kb on - strand, within GFF2441at 494.852 kb on + strand, within GFF2441at 494.853 kb on - strand, within GFF2441at 495.089 kb on + strand, within GFF2441at 495.090 kb on - strand, within GFF2441at 495.090 kb on - strand, within GFF2441at 495.131 kb on + strand, within GFF2441at 495.131 kb on + strand, within GFF2441at 495.132 kb on - strand, within GFF2441at 495.248 kb on + strand, within GFF2441at 495.249 kb on - strand, within GFF2441at 495.249 kb on - strand, within GFF2441at 495.287 kb on + strand, within GFF2441at 495.287 kb on + strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.288 kb on - strand, within GFF2441at 495.416 kb on + strandat 495.447 kb on - strandat 495.447 kb on - strandat 495.447 kb on - strandat 495.530 kb on + strandat 495.530 kb on + strandat 495.530 kb on + strandat 495.572 kb on + strandat 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.987 kb on + strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 495.988 kb on - strand, within GFF2442at 496.101 kb on + strand, within GFF2442at 496.218 kb on + strand, within GFF2442at 496.218 kb on + strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.219 kb on - strand, within GFF2442at 496.575 kb on + strand, within GFF2442at 496.576 kb on - strand, within GFF2442at 496.576 kb on - strand, within GFF2442at 496.576 kb on - strand, within GFF2442

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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491,567 + GFF2439 0.66 +1.5
491,567 + GFF2439 0.66 -0.9
492,033 + GFF2440 0.22 -1.1
492,033 + GFF2440 0.22 -0.5
492,033 + GFF2440 0.22 -0.5
492,033 + GFF2440 0.22 -0.1
492,033 + GFF2440 0.22 +0.4
492,034 - GFF2440 0.22 -0.7
492,034 - GFF2440 0.22 -0.1
492,034 - GFF2440 0.22 -0.1
492,034 - GFF2440 0.22 -0.0
492,034 - GFF2440 0.22 +0.0
492,252 + GFF2440 0.68 +1.0
492,253 - GFF2440 0.68 -0.0
492,253 - GFF2440 0.68 +0.1
492,315 + GFF2440 0.81 -0.8
492,315 + GFF2440 0.81 -0.2
492,315 + GFF2440 0.81 -1.2
492,315 + GFF2440 0.81 -1.1
492,316 - GFF2440 0.81 -1.6
492,316 - GFF2440 0.81 -1.6
492,316 - GFF2440 0.81 -0.9
492,316 - GFF2440 0.81 -0.6
492,316 - GFF2440 0.81 -0.3
492,316 - GFF2440 0.81 -1.2
492,374 - -0.1
492,390 + +0.5
492,390 + +0.3
492,390 + -0.5
492,390 + -0.4
492,390 + +0.9
492,390 + -0.4
492,390 + -1.0
492,390 + +0.6
492,391 - +0.2
492,391 - -0.5
492,391 - -0.9
492,391 - +0.6
492,393 + +0.1
492,393 + -0.1
492,393 + -0.9
492,393 + +0.6
492,394 - +0.5
492,409 + -0.9
492,409 + -0.9
492,410 - +0.3
492,410 - +0.0
492,491 - +0.7
492,503 + +0.3
492,503 + -0.0
492,504 - -0.6
492,508 - +0.4
492,508 - +0.6
492,508 - -0.9
492,508 - +1.4
492,508 - -0.3
492,508 - -0.3
492,508 - -0.6
492,508 - -0.0
492,508 - +0.1
492,530 + -0.6
492,530 + -0.8
492,530 + +1.2
492,531 - +0.3
492,531 - -0.7
492,531 - +0.1
492,531 - +0.3
492,617 + -0.5
492,617 + -0.0
492,617 + +0.3
492,618 - -0.1
492,618 - +0.6
492,618 - -0.2
492,618 - +0.9
492,914 + GFF2441 0.12 -0.1
492,914 + GFF2441 0.12 +1.3
492,914 + GFF2441 0.12 -0.1
492,915 - GFF2441 0.12 -0.9
492,915 - GFF2441 0.12 -0.9
492,915 - GFF2441 0.12 -0.3
492,915 - GFF2441 0.12 +0.6
492,915 - GFF2441 0.12 +0.1
493,016 + GFF2441 0.15 -0.7
493,016 + GFF2441 0.15 +1.3
493,017 - GFF2441 0.15 -0.2
493,017 - GFF2441 0.15 +0.6
493,017 - GFF2441 0.15 +0.7
493,101 - GFF2441 0.18 +1.0
493,232 + GFF2441 0.22 +1.5
493,233 - GFF2441 0.22 -0.2
493,373 + GFF2441 0.26 -1.1
493,373 + GFF2441 0.26 +0.2
493,373 + GFF2441 0.26 +0.6
493,373 + GFF2441 0.26 +0.5
493,374 - GFF2441 0.26 +1.2
493,374 - GFF2441 0.26 +1.1
493,374 - GFF2441 0.26 +0.0
493,374 - GFF2441 0.26 +0.5
493,374 - GFF2441 0.26 -0.1
493,374 - GFF2441 0.26 -0.0
493,375 + GFF2441 0.26 +1.3
493,375 + GFF2441 0.26 -1.1
493,375 + GFF2441 0.26 +0.3
493,415 + GFF2441 0.28 -0.0
493,415 + GFF2441 0.28 +0.1
493,415 + GFF2441 0.28 -1.6
493,416 - GFF2441 0.28 +0.1
493,695 - GFF2441 0.37 -0.6
493,695 - GFF2441 0.37 -1.3
493,695 - GFF2441 0.37 +1.2
493,838 + GFF2441 0.41 +1.9
493,838 + GFF2441 0.41 -0.7
493,839 - GFF2441 0.41 +0.9
493,839 - GFF2441 0.41 +0.8
493,839 - GFF2441 0.41 +0.6
493,839 - GFF2441 0.41 +0.3
493,899 - GFF2441 0.43 -0.5
494,021 + GFF2441 0.47 +0.9
494,021 + GFF2441 0.47 +0.6
494,022 - GFF2441 0.47 +0.6
494,022 - GFF2441 0.47 +0.2
494,500 + GFF2441 0.62 +0.1
494,500 + GFF2441 0.62 -0.1
494,500 + GFF2441 0.62 +0.6
494,500 + GFF2441 0.62 +0.2
494,500 + GFF2441 0.62 +0.5
494,500 + GFF2441 0.62 -0.1
494,500 + GFF2441 0.62 -1.9
494,501 - GFF2441 0.62 +0.6
494,501 - GFF2441 0.62 +0.3
494,609 + GFF2441 0.66 +0.2
494,609 + GFF2441 0.66 +0.6
494,609 + GFF2441 0.66 +1.1
494,609 + GFF2441 0.66 -0.1
494,609 + GFF2441 0.66 +0.5
494,609 + GFF2441 0.66 +0.5
494,609 + GFF2441 0.66 +0.9
494,609 + GFF2441 0.66 +0.3
494,609 + GFF2441 0.66 +0.9
494,610 - GFF2441 0.66 +0.6
494,610 - GFF2441 0.66 -0.2
494,610 - GFF2441 0.66 -0.4
494,703 - GFF2441 0.69 +1.0
494,852 + GFF2441 0.74 -0.5
494,853 - GFF2441 0.74 -0.0
495,089 + GFF2441 0.81 -0.3
495,090 - GFF2441 0.81 +0.1
495,090 - GFF2441 0.81 +0.3
495,131 + GFF2441 0.82 -0.3
495,131 + GFF2441 0.82 -0.4
495,132 - GFF2441 0.83 +0.2
495,248 + GFF2441 0.86 -0.6
495,249 - GFF2441 0.86 +0.9
495,249 - GFF2441 0.86 +1.1
495,287 + GFF2441 0.87 +1.9
495,287 + GFF2441 0.87 +0.6
495,288 - GFF2441 0.88 +1.5
495,288 - GFF2441 0.88 +0.7
495,288 - GFF2441 0.88 +0.1
495,416 + +0.3
495,447 - +2.3
495,447 - -0.6
495,447 - +0.7
495,530 + -0.7
495,530 + +1.2
495,530 + -0.6
495,572 + -0.2
495,987 + GFF2442 0.26 -1.8
495,987 + GFF2442 0.26 -0.7
495,987 + GFF2442 0.26 +1.1
495,987 + GFF2442 0.26 -0.6
495,987 + GFF2442 0.26 +0.4
495,987 + GFF2442 0.26 -0.3
495,988 - GFF2442 0.26 +0.2
495,988 - GFF2442 0.26 -0.8
495,988 - GFF2442 0.26 +1.1
495,988 - GFF2442 0.26 -1.1
496,101 + GFF2442 0.36 +1.5
496,218 + GFF2442 0.46 -0.1
496,218 + GFF2442 0.46 +0.2
496,219 - GFF2442 0.46 +1.7
496,219 - GFF2442 0.46 +0.5
496,219 - GFF2442 0.46 +0.9
496,575 + GFF2442 0.77 -0.4
496,576 - GFF2442 0.77 -0.2
496,576 - GFF2442 0.77 -0.4
496,576 - GFF2442 0.77 +1.6

Or see this region's nucleotide sequence