Strain Fitness in Variovorax sp. SCN45 around GFF2433

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2432 and GFF2433 are separated by 107 nucleotidesGFF2433 and GFF2434 are separated by 81 nucleotidesGFF2434 and GFF2435 overlap by 4 nucleotides GFF2432 - Fe2+-dicitrate sensor, membrane component, at 481,660 to 482,652 GFF2432 GFF2433 - Putative OMR family iron-siderophore receptor precursor, at 482,760 to 485,210 GFF2433 GFF2434 - no description, at 485,292 to 485,588 GFF2434 GFF2435 - FIG138928: iron-regulated membrane protein, at 485,585 to 487,261 GFF2435 Position (kb) 482 483 484 485 486Strain fitness (log2 ratio) -2 -1 0 1 2 3at 482.092 kb on + strand, within GFF2432at 482.093 kb on - strand, within GFF2432at 482.609 kb on - strandat 482.621 kb on - strandat 482.917 kb on - strandat 482.917 kb on - strandat 482.917 kb on - strandat 483.039 kb on + strand, within GFF2433at 483.040 kb on - strand, within GFF2433at 483.040 kb on - strand, within GFF2433at 483.040 kb on - strand, within GFF2433at 483.114 kb on + strand, within GFF2433at 483.115 kb on - strand, within GFF2433at 483.234 kb on + strand, within GFF2433at 483.234 kb on + strand, within GFF2433at 483.234 kb on + strand, within GFF2433at 483.234 kb on + strand, within GFF2433at 483.235 kb on - strand, within GFF2433at 483.235 kb on - strand, within GFF2433at 483.235 kb on - strand, within GFF2433at 483.418 kb on - strand, within GFF2433at 483.432 kb on + strand, within GFF2433at 483.444 kb on + strand, within GFF2433at 483.444 kb on + strand, within GFF2433at 483.445 kb on - strand, within GFF2433at 483.445 kb on - strand, within GFF2433at 483.450 kb on + strand, within GFF2433at 483.451 kb on - strand, within GFF2433at 483.516 kb on + strand, within GFF2433at 483.516 kb on + strand, within GFF2433at 483.516 kb on + strand, within GFF2433at 483.516 kb on + strand, within GFF2433at 483.517 kb on - strand, within GFF2433at 483.765 kb on + strand, within GFF2433at 483.765 kb on + strand, within GFF2433at 483.765 kb on + strand, within GFF2433at 483.766 kb on - strand, within GFF2433at 483.766 kb on - strand, within GFF2433at 483.766 kb on - strand, within GFF2433at 483.766 kb on - strand, within GFF2433at 483.790 kb on - strand, within GFF2433at 483.846 kb on + strand, within GFF2433at 484.075 kb on - strand, within GFF2433at 484.080 kb on + strand, within GFF2433at 484.245 kb on + strand, within GFF2433at 484.246 kb on - strand, within GFF2433at 484.246 kb on - strand, within GFF2433at 484.246 kb on - strand, within GFF2433at 484.246 kb on - strand, within GFF2433at 484.299 kb on + strand, within GFF2433at 484.300 kb on - strand, within GFF2433at 484.383 kb on + strand, within GFF2433at 484.383 kb on + strand, within GFF2433at 484.383 kb on + strand, within GFF2433at 484.515 kb on + strand, within GFF2433at 484.515 kb on + strand, within GFF2433at 484.515 kb on + strand, within GFF2433at 484.516 kb on - strand, within GFF2433at 484.516 kb on - strand, within GFF2433at 484.534 kb on - strand, within GFF2433at 484.534 kb on - strand, within GFF2433at 484.534 kb on - strand, within GFF2433at 484.551 kb on + strand, within GFF2433at 484.551 kb on + strand, within GFF2433at 484.551 kb on + strand, within GFF2433at 484.552 kb on - strand, within GFF2433at 484.552 kb on - strand, within GFF2433at 484.579 kb on - strand, within GFF2433at 484.599 kb on + strand, within GFF2433at 484.599 kb on + strand, within GFF2433at 484.600 kb on - strand, within GFF2433at 484.600 kb on - strand, within GFF2433at 484.600 kb on - strand, within GFF2433at 484.626 kb on + strand, within GFF2433at 484.626 kb on + strand, within GFF2433at 484.627 kb on - strand, within GFF2433at 484.628 kb on - strand, within GFF2433at 484.670 kb on + strand, within GFF2433at 484.670 kb on + strand, within GFF2433at 484.708 kb on + strand, within GFF2433at 484.758 kb on + strand, within GFF2433at 484.758 kb on + strand, within GFF2433at 484.759 kb on - strand, within GFF2433at 484.759 kb on - strand, within GFF2433at 484.761 kb on + strand, within GFF2433at 484.762 kb on - strand, within GFF2433at 484.762 kb on - strand, within GFF2433at 484.762 kb on - strand, within GFF2433at 484.762 kb on - strand, within GFF2433at 484.929 kb on + strand, within GFF2433at 484.930 kb on - strand, within GFF2433at 484.995 kb on + strandat 484.995 kb on + strandat 484.995 kb on + strandat 484.996 kb on - strandat 484.996 kb on - strandat 484.998 kb on + strandat 484.998 kb on + strandat 485.004 kb on + strandat 485.005 kb on - strandat 485.134 kb on - strandat 485.134 kb on - strandat 485.134 kb on - strandat 485.136 kb on + strandat 485.136 kb on + strandat 485.136 kb on + strandat 485.160 kb on + strandat 485.160 kb on + strandat 485.160 kb on + strandat 485.161 kb on - strandat 485.164 kb on - strandat 485.199 kb on + strandat 485.199 kb on + strandat 485.199 kb on + strandat 485.200 kb on - strandat 485.200 kb on - strandat 485.249 kb on + strandat 485.249 kb on + strandat 485.249 kb on + strandat 485.249 kb on + strandat 485.250 kb on - strandat 485.250 kb on - strandat 485.250 kb on - strandat 485.250 kb on - strandat 485.638 kb on + strandat 485.638 kb on + strandat 485.638 kb on + strandat 485.639 kb on - strandat 485.639 kb on - strandat 485.639 kb on - strandat 485.639 kb on - strandat 485.639 kb on - strandat 485.639 kb on - strandat 485.843 kb on + strand, within GFF2435at 485.843 kb on + strand, within GFF2435at 485.843 kb on + strand, within GFF2435at 485.844 kb on - strand, within GFF2435at 485.844 kb on - strand, within GFF2435at 485.844 kb on - strand, within GFF2435at 485.844 kb on - strand, within GFF2435at 485.844 kb on - strand, within GFF2435at 485.924 kb on + strand, within GFF2435at 485.924 kb on + strand, within GFF2435at 485.925 kb on - strand, within GFF2435at 485.948 kb on + strand, within GFF2435at 485.948 kb on + strand, within GFF2435at 486.062 kb on + strand, within GFF2435at 486.062 kb on + strand, within GFF2435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
482,092 + GFF2432 0.44 -0.6
482,093 - GFF2432 0.44 +0.4
482,609 - +0.2
482,621 - -0.2
482,917 - +0.2
482,917 - -1.2
482,917 - +0.4
483,039 + GFF2433 0.11 -0.6
483,040 - GFF2433 0.11 +0.9
483,040 - GFF2433 0.11 +0.9
483,040 - GFF2433 0.11 -1.2
483,114 + GFF2433 0.14 -0.6
483,115 - GFF2433 0.14 +0.7
483,234 + GFF2433 0.19 -0.4
483,234 + GFF2433 0.19 +0.3
483,234 + GFF2433 0.19 -0.0
483,234 + GFF2433 0.19 +0.8
483,235 - GFF2433 0.19 -0.8
483,235 - GFF2433 0.19 +0.3
483,235 - GFF2433 0.19 -0.0
483,418 - GFF2433 0.27 +0.1
483,432 + GFF2433 0.27 +0.4
483,444 + GFF2433 0.28 +0.2
483,444 + GFF2433 0.28 +0.5
483,445 - GFF2433 0.28 -0.6
483,445 - GFF2433 0.28 +1.1
483,450 + GFF2433 0.28 +0.6
483,451 - GFF2433 0.28 -0.6
483,516 + GFF2433 0.31 +0.0
483,516 + GFF2433 0.31 +0.2
483,516 + GFF2433 0.31 -0.3
483,516 + GFF2433 0.31 -0.0
483,517 - GFF2433 0.31 +1.4
483,765 + GFF2433 0.41 -0.1
483,765 + GFF2433 0.41 -0.0
483,765 + GFF2433 0.41 +0.6
483,766 - GFF2433 0.41 -0.1
483,766 - GFF2433 0.41 +0.1
483,766 - GFF2433 0.41 +0.3
483,766 - GFF2433 0.41 +1.7
483,790 - GFF2433 0.42 +0.2
483,846 + GFF2433 0.44 -0.3
484,075 - GFF2433 0.54 +0.1
484,080 + GFF2433 0.54 -1.0
484,245 + GFF2433 0.61 -0.6
484,246 - GFF2433 0.61 -1.5
484,246 - GFF2433 0.61 -0.8
484,246 - GFF2433 0.61 +0.6
484,246 - GFF2433 0.61 +2.5
484,299 + GFF2433 0.63 -0.2
484,300 - GFF2433 0.63 -0.4
484,383 + GFF2433 0.66 -0.7
484,383 + GFF2433 0.66 -0.1
484,383 + GFF2433 0.66 -0.0
484,515 + GFF2433 0.72 -0.3
484,515 + GFF2433 0.72 -0.1
484,515 + GFF2433 0.72 -0.9
484,516 - GFF2433 0.72 -1.1
484,516 - GFF2433 0.72 +0.3
484,534 - GFF2433 0.72 +0.0
484,534 - GFF2433 0.72 +0.1
484,534 - GFF2433 0.72 -0.1
484,551 + GFF2433 0.73 -0.1
484,551 + GFF2433 0.73 +0.8
484,551 + GFF2433 0.73 +0.3
484,552 - GFF2433 0.73 -0.5
484,552 - GFF2433 0.73 +0.9
484,579 - GFF2433 0.74 +0.0
484,599 + GFF2433 0.75 +1.1
484,599 + GFF2433 0.75 -0.0
484,600 - GFF2433 0.75 -0.7
484,600 - GFF2433 0.75 +0.9
484,600 - GFF2433 0.75 +0.1
484,626 + GFF2433 0.76 +0.3
484,626 + GFF2433 0.76 +0.1
484,627 - GFF2433 0.76 +0.7
484,628 - GFF2433 0.76 -1.6
484,670 + GFF2433 0.78 +0.4
484,670 + GFF2433 0.78 +0.1
484,708 + GFF2433 0.79 -0.0
484,758 + GFF2433 0.82 +1.2
484,758 + GFF2433 0.82 -0.5
484,759 - GFF2433 0.82 -0.8
484,759 - GFF2433 0.82 -2.1
484,761 + GFF2433 0.82 +2.9
484,762 - GFF2433 0.82 -0.1
484,762 - GFF2433 0.82 -0.1
484,762 - GFF2433 0.82 -0.7
484,762 - GFF2433 0.82 +0.2
484,929 + GFF2433 0.88 -0.1
484,930 - GFF2433 0.89 -0.8
484,995 + -0.5
484,995 + +0.8
484,995 + -0.7
484,996 - +1.0
484,996 - +0.2
484,998 + -0.4
484,998 + -0.3
485,004 + +0.1
485,005 - -0.7
485,134 - +0.2
485,134 - -0.1
485,134 - -0.8
485,136 + -0.7
485,136 + -0.1
485,136 + +0.3
485,160 + -0.2
485,160 + +0.9
485,160 + -0.3
485,161 - +0.0
485,164 - +0.3
485,199 + -0.1
485,199 + -0.7
485,199 + +0.9
485,200 - +0.7
485,200 - +0.3
485,249 + -1.0
485,249 + -0.8
485,249 + -0.2
485,249 + +0.3
485,250 - +0.6
485,250 - -0.1
485,250 - -0.7
485,250 - +0.6
485,638 + -0.2
485,638 + -0.2
485,638 + +0.6
485,639 - -0.5
485,639 - -0.0
485,639 - -0.7
485,639 - -0.2
485,639 - -1.1
485,639 - +0.4
485,843 + GFF2435 0.15 +0.2
485,843 + GFF2435 0.15 +0.3
485,843 + GFF2435 0.15 -0.3
485,844 - GFF2435 0.15 -0.6
485,844 - GFF2435 0.15 -0.1
485,844 - GFF2435 0.15 +0.8
485,844 - GFF2435 0.15 +0.9
485,844 - GFF2435 0.15 -0.1
485,924 + GFF2435 0.20 -0.5
485,924 + GFF2435 0.20 -0.2
485,925 - GFF2435 0.20 +1.0
485,948 + GFF2435 0.22 -0.4
485,948 + GFF2435 0.22 +0.1
486,062 + GFF2435 0.28 +0.3
486,062 + GFF2435 0.28 +0.3

Or see this region's nucleotide sequence