Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2416 and GFF2417 are separated by 0 nucleotides GFF2417 and GFF2418 are separated by 26 nucleotides
GFF2416 - Transcriptional regulator YbhD, LysR family, at 467,072 to 467,983
GFF2416
GFF2417 - putative amidase, at 467,984 to 469,414
GFF2417
GFF2418 - BUG/TctC family periplasmic protein, at 469,441 to 470,430
GFF2418
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 467.035 kb on - strand at 467.415 kb on - strand, within GFF2416 at 467.570 kb on + strand, within GFF2416 at 467.571 kb on - strand, within GFF2416 at 467.732 kb on + strand, within GFF2416 at 467.732 kb on + strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.733 kb on - strand, within GFF2416 at 467.930 kb on + strand at 467.930 kb on + strand at 468.613 kb on - strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.663 kb on + strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.664 kb on - strand, within GFF2417 at 468.771 kb on + strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 468.772 kb on - strand, within GFF2417 at 469.652 kb on + strand, within GFF2418 at 469.781 kb on + strand, within GFF2418 at 469.781 kb on + strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.782 kb on - strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.994 kb on + strand, within GFF2418 at 469.995 kb on - strand, within GFF2418 at 470.012 kb on + strand, within GFF2418 at 470.108 kb on + strand, within GFF2418 at 470.108 kb on + strand, within GFF2418 at 470.150 kb on + strand, within GFF2418 at 470.309 kb on + strand, within GFF2418
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 467,035 - -1.1 467,415 - GFF2416 0.38 -0.1 467,570 + GFF2416 0.55 -0.8 467,571 - GFF2416 0.55 +0.1 467,732 + GFF2416 0.72 -0.6 467,732 + GFF2416 0.72 -0.1 467,733 - GFF2416 0.72 -0.3 467,733 - GFF2416 0.72 +1.4 467,733 - GFF2416 0.72 +0.1 467,930 + +0.3 467,930 + +0.1 468,613 - GFF2417 0.44 +0.3 468,663 + GFF2417 0.47 -0.4 468,663 + GFF2417 0.47 +0.1 468,663 + GFF2417 0.47 -0.4 468,664 - GFF2417 0.48 +0.7 468,664 - GFF2417 0.48 +0.2 468,664 - GFF2417 0.48 +0.9 468,664 - GFF2417 0.48 -2.0 468,664 - GFF2417 0.48 +0.3 468,664 - GFF2417 0.48 +0.9 468,771 + GFF2417 0.55 +0.5 468,772 - GFF2417 0.55 +3.9 468,772 - GFF2417 0.55 +0.7 468,772 - GFF2417 0.55 -0.7 468,772 - GFF2417 0.55 -0.1 468,772 - GFF2417 0.55 +2.8 469,652 + GFF2418 0.21 -1.3 469,781 + GFF2418 0.34 -0.4 469,781 + GFF2418 0.34 -0.1 469,782 - GFF2418 0.34 -0.0 469,782 - GFF2418 0.34 -0.1 469,782 - GFF2418 0.34 -0.4 469,994 + GFF2418 0.56 -0.5 469,994 + GFF2418 0.56 +0.2 469,994 + GFF2418 0.56 -0.4 469,995 - GFF2418 0.56 +0.2 470,012 + GFF2418 0.58 +0.4 470,108 + GFF2418 0.67 -0.1 470,108 + GFF2418 0.67 -0.7 470,150 + GFF2418 0.72 +1.3 470,309 + GFF2418 0.88 +1.3
Or see this region's nucleotide sequence