Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2411 and GFF2412 are separated by 13 nucleotides GFF2412 and GFF2413 are separated by 197 nucleotides GFF2413 and GFF2414 are separated by 38 nucleotides GFF2414 and GFF2415 are separated by 12 nucleotides
GFF2411 - no description, at 463,528 to 463,890
GFF2411
GFF2412 - Transcriptional regulator, MarR family, at 463,904 to 464,458
GFF2412
GFF2413 - hypothetical protein, at 464,656 to 465,636
GFF2413
GFF2414 - Cell division protein FtsW, at 465,675 to 466,202
GFF2414
GFF2415 - Trans-aconitate 2-methyltransferase (EC 2.1.1.144), at 466,215 to 466,979
GFF2415
Position (kb) 464
465
466 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 464.116 kb on - strand, within GFF2412 at 464.394 kb on + strand, within GFF2412 at 464.459 kb on - strand at 464.459 kb on - strand at 464.520 kb on + strand at 464.520 kb on + strand at 464.534 kb on - strand at 464.543 kb on + strand at 464.544 kb on + strand at 464.544 kb on + strand at 464.546 kb on + strand at 464.995 kb on + strand, within GFF2413 at 465.040 kb on + strand, within GFF2413 at 465.220 kb on + strand, within GFF2413 at 465.299 kb on - strand, within GFF2413 at 465.532 kb on + strand, within GFF2413 at 465.533 kb on - strand, within GFF2413 at 465.587 kb on - strand at 465.642 kb on + strand at 465.642 kb on + strand at 465.642 kb on + strand at 465.642 kb on + strand at 465.643 kb on - strand at 465.643 kb on - strand at 465.643 kb on - strand at 466.116 kb on + strand, within GFF2414 at 466.116 kb on + strand, within GFF2414 at 466.116 kb on + strand, within GFF2414 at 466.117 kb on - strand, within GFF2414 at 466.117 kb on - strand, within GFF2414 at 466.306 kb on + strand, within GFF2415 at 466.306 kb on + strand, within GFF2415 at 466.306 kb on + strand, within GFF2415 at 466.307 kb on - strand, within GFF2415 at 466.307 kb on - strand, within GFF2415 at 466.307 kb on - strand, within GFF2415 at 466.355 kb on - strand, within GFF2415 at 466.355 kb on - strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.420 kb on + strand, within GFF2415 at 466.421 kb on - strand, within GFF2415 at 466.421 kb on - strand, within GFF2415 at 466.423 kb on + strand, within GFF2415 at 466.423 kb on + strand, within GFF2415 at 466.423 kb on + strand, within GFF2415 at 466.423 kb on + strand, within GFF2415 at 466.424 kb on - strand, within GFF2415 at 466.424 kb on - strand, within GFF2415 at 466.424 kb on - strand, within GFF2415 at 466.424 kb on - strand, within GFF2415 at 466.437 kb on + strand, within GFF2415 at 466.438 kb on - strand, within GFF2415 at 466.438 kb on - strand, within GFF2415 at 466.438 kb on - strand, within GFF2415 at 466.474 kb on + strand, within GFF2415 at 466.475 kb on - strand, within GFF2415 at 466.477 kb on + strand, within GFF2415
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 464,116 - GFF2412 0.38 -0.4 464,394 + GFF2412 0.88 +1.2 464,459 - -0.4 464,459 - +0.7 464,520 + -0.4 464,520 + +0.1 464,534 - +0.1 464,543 + +0.0 464,544 + +0.5 464,544 + +0.2 464,546 + -0.0 464,995 + GFF2413 0.35 -0.9 465,040 + GFF2413 0.39 +0.4 465,220 + GFF2413 0.57 +1.9 465,299 - GFF2413 0.66 -0.6 465,532 + GFF2413 0.89 +0.9 465,533 - GFF2413 0.89 +0.2 465,587 - +4.1 465,642 + -0.4 465,642 + +0.5 465,642 + +0.9 465,642 + -0.6 465,643 - +0.1 465,643 - -0.8 465,643 - +0.5 466,116 + GFF2414 0.84 +0.1 466,116 + GFF2414 0.84 +0.6 466,116 + GFF2414 0.84 +0.3 466,117 - GFF2414 0.84 +0.7 466,117 - GFF2414 0.84 +1.3 466,306 + GFF2415 0.12 +0.1 466,306 + GFF2415 0.12 -0.1 466,306 + GFF2415 0.12 +0.3 466,307 - GFF2415 0.12 -0.3 466,307 - GFF2415 0.12 -0.4 466,307 - GFF2415 0.12 +0.1 466,355 - GFF2415 0.18 +0.3 466,355 - GFF2415 0.18 -0.7 466,420 + GFF2415 0.27 -0.5 466,420 + GFF2415 0.27 -0.4 466,420 + GFF2415 0.27 +0.4 466,420 + GFF2415 0.27 +1.9 466,420 + GFF2415 0.27 +1.2 466,421 - GFF2415 0.27 +0.6 466,421 - GFF2415 0.27 +0.2 466,423 + GFF2415 0.27 +0.4 466,423 + GFF2415 0.27 -0.8 466,423 + GFF2415 0.27 -0.4 466,423 + GFF2415 0.27 +0.9 466,424 - GFF2415 0.27 -0.3 466,424 - GFF2415 0.27 -0.4 466,424 - GFF2415 0.27 +0.3 466,424 - GFF2415 0.27 -0.5 466,437 + GFF2415 0.29 -0.0 466,438 - GFF2415 0.29 +0.0 466,438 - GFF2415 0.29 +0.2 466,438 - GFF2415 0.29 -0.8 466,474 + GFF2415 0.34 -0.3 466,475 - GFF2415 0.34 -0.3 466,477 + GFF2415 0.34 +0.1
Or see this region's nucleotide sequence