Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2232 and GFF2233 are separated by 121 nucleotides GFF2233 and GFF2234 are separated by 84 nucleotides GFF2234 and GFF2235 are separated by 7 nucleotides
GFF2232 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ 3-oxoadipyl-CoA thiolase (EC 2.3.1.174), at 293,464 to 294,669
GFF2232
GFF2233 - hypothetical protein, at 294,791 to 295,810
GFF2233
GFF2234 - no description, at 295,895 to 296,095
GFF2234
GFF2235 - hypothetical protein, at 296,103 to 296,834
GFF2235
Position (kb) 294
295
296 Strain fitness (log2 ratio) -1
0
1 at 293.888 kb on - strand, within GFF2232 at 293.939 kb on - strand, within GFF2232 at 293.986 kb on + strand, within GFF2232 at 294.604 kb on + strand at 294.605 kb on - strand at 294.737 kb on - strand at 295.160 kb on + strand, within GFF2233 at 295.209 kb on - strand, within GFF2233 at 295.241 kb on + strand, within GFF2233 at 295.241 kb on + strand, within GFF2233 at 295.242 kb on - strand, within GFF2233 at 295.242 kb on - strand, within GFF2233 at 295.242 kb on - strand, within GFF2233 at 295.298 kb on + strand, within GFF2233 at 295.385 kb on + strand, within GFF2233 at 295.406 kb on + strand, within GFF2233 at 295.406 kb on + strand, within GFF2233 at 296.101 kb on - strand at 296.101 kb on - strand at 296.158 kb on - strand at 296.251 kb on - strand, within GFF2235 at 296.251 kb on - strand, within GFF2235 at 296.251 kb on - strand, within GFF2235 at 296.543 kb on + strand, within GFF2235 at 296.772 kb on + strand at 296.773 kb on - strand at 296.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 293,888 - GFF2232 0.35 +0.0 293,939 - GFF2232 0.39 -0.1 293,986 + GFF2232 0.43 +1.3 294,604 + +0.6 294,605 - +0.6 294,737 - -0.7 295,160 + GFF2233 0.36 -0.8 295,209 - GFF2233 0.41 -0.9 295,241 + GFF2233 0.44 +1.7 295,241 + GFF2233 0.44 +0.1 295,242 - GFF2233 0.44 +0.7 295,242 - GFF2233 0.44 +0.2 295,242 - GFF2233 0.44 -0.1 295,298 + GFF2233 0.50 -0.1 295,385 + GFF2233 0.58 -0.4 295,406 + GFF2233 0.60 +0.3 295,406 + GFF2233 0.60 -0.1 296,101 - -1.4 296,101 - -0.7 296,158 - -0.5 296,251 - GFF2235 0.20 -1.5 296,251 - GFF2235 0.20 -0.7 296,251 - GFF2235 0.20 +0.0 296,543 + GFF2235 0.60 +0.2 296,772 + +0.3 296,773 - -0.1 296,773 - +0.9
Or see this region's nucleotide sequence