Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2205 and GFF2206 overlap by 4 nucleotides GFF2206 and GFF2207 overlap by 4 nucleotides GFF2207 and GFF2208 overlap by 8 nucleotides
GFF2205 - hypothetical protein, at 266,597 to 267,580
GFF2205
GFF2206 - Type II/IV secretion system protein TadC, associated with Flp pilus assembly, at 267,577 to 268,539
GFF2206
GFF2207 - Flp pilus assembly protein TadB, at 268,536 to 269,534
GFF2207
GFF2208 - Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily, at 269,527 to 270,840
GFF2208
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1 at 267.563 kb on + strand at 267.564 kb on - strand at 267.887 kb on + strand, within GFF2206 at 267.922 kb on + strand, within GFF2206 at 267.923 kb on - strand, within GFF2206 at 267.923 kb on - strand, within GFF2206 at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.561 kb on - strand at 268.600 kb on + strand at 268.600 kb on + strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.601 kb on - strand at 268.604 kb on + strand at 268.604 kb on + strand at 268.605 kb on - strand at 268.659 kb on - strand, within GFF2207 at 269.037 kb on + strand, within GFF2207 at 269.041 kb on + strand, within GFF2207 at 269.042 kb on - strand, within GFF2207 at 269.172 kb on + strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.173 kb on - strand, within GFF2207 at 269.300 kb on + strand, within GFF2207 at 270.100 kb on + strand, within GFF2208 at 270.100 kb on + strand, within GFF2208 at 270.101 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.132 kb on - strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.506 kb on + strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208 at 270.507 kb on - strand, within GFF2208
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 267,563 + +1.7 267,564 - +0.3 267,887 + GFF2206 0.32 -0.8 267,922 + GFF2206 0.36 +0.1 267,923 - GFF2206 0.36 +1.7 267,923 - GFF2206 0.36 +0.1 268,560 + +0.2 268,560 + -0.1 268,560 + +0.7 268,560 + -0.4 268,560 + +0.2 268,561 - +0.9 268,600 + -0.9 268,600 + -1.5 268,601 - -0.0 268,601 - -0.4 268,601 - +1.2 268,604 + -0.9 268,604 + -0.2 268,605 - -0.1 268,659 - GFF2207 0.12 +0.1 269,037 + GFF2207 0.50 +0.3 269,041 + GFF2207 0.51 +0.2 269,042 - GFF2207 0.51 +1.6 269,172 + GFF2207 0.64 +0.9 269,173 - GFF2207 0.64 +1.2 269,173 - GFF2207 0.64 +1.3 269,173 - GFF2207 0.64 +1.0 269,300 + GFF2207 0.76 -0.7 270,100 + GFF2208 0.44 +0.9 270,100 + GFF2208 0.44 -2.2 270,101 - GFF2208 0.44 -0.5 270,132 - GFF2208 0.46 +0.1 270,132 - GFF2208 0.46 +0.4 270,132 - GFF2208 0.46 +0.7 270,132 - GFF2208 0.46 -0.9 270,506 + GFF2208 0.75 +0.8 270,506 + GFF2208 0.75 +0.9 270,506 + GFF2208 0.75 +0.9 270,506 + GFF2208 0.75 -0.4 270,506 + GFF2208 0.75 +0.1 270,506 + GFF2208 0.75 -0.1 270,506 + GFF2208 0.75 -1.0 270,506 + GFF2208 0.75 -0.2 270,506 + GFF2208 0.75 -0.6 270,507 - GFF2208 0.75 +0.2 270,507 - GFF2208 0.75 -1.5 270,507 - GFF2208 0.75 -0.1 270,507 - GFF2208 0.75 +0.0 270,507 - GFF2208 0.75 +0.9 270,507 - GFF2208 0.75 +0.2 270,507 - GFF2208 0.75 -0.0 270,507 - GFF2208 0.75 +0.3 270,507 - GFF2208 0.75 +0.9 270,507 - GFF2208 0.75 +0.6 270,507 - GFF2208 0.75 +0.2
Or see this region's nucleotide sequence