Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2202 and GFF2203 overlap by 4 nucleotides GFF2203 and GFF2204 are separated by 34 nucleotides GFF2204 and GFF2205 are separated by 146 nucleotides GFF2205 and GFF2206 overlap by 4 nucleotides GFF2206 and GFF2207 overlap by 4 nucleotides
GFF2202 - hypothetical protein, at 265,218 to 265,712
GFF2202
GFF2203 - no description, at 265,709 to 266,182
GFF2203
GFF2204 - no description, at 266,217 to 266,450
GFF2204
GFF2205 - hypothetical protein, at 266,597 to 267,580
GFF2205
GFF2206 - Type II/IV secretion system protein TadC, associated with Flp pilus assembly, at 267,577 to 268,539
GFF2206
GFF2207 - Flp pilus assembly protein TadB, at 268,536 to 269,534
GFF2207
Position (kb) 266
267
268 Strain fitness (log2 ratio) -1
0
1
2
3 at 265.603 kb on + strand, within GFF2202 at 265.790 kb on + strand, within GFF2203 at 265.985 kb on + strand, within GFF2203 at 265.990 kb on + strand, within GFF2203 at 265.999 kb on - strand, within GFF2203 at 266.071 kb on - strand, within GFF2203 at 266.311 kb on + strand, within GFF2204 at 266.311 kb on + strand, within GFF2204 at 266.312 kb on - strand, within GFF2204 at 266.425 kb on + strand, within GFF2204 at 266.606 kb on - strand at 266.937 kb on + strand, within GFF2205 at 267.120 kb on + strand, within GFF2205 at 267.196 kb on + strand, within GFF2205 at 267.197 kb on - strand, within GFF2205 at 267.197 kb on - strand, within GFF2205 at 267.198 kb on + strand, within GFF2205 at 267.198 kb on + strand, within GFF2205 at 267.199 kb on - strand, within GFF2205 at 267.199 kb on - strand, within GFF2205 at 267.360 kb on + strand, within GFF2205 at 267.360 kb on + strand, within GFF2205 at 267.360 kb on + strand, within GFF2205 at 267.563 kb on + strand at 267.564 kb on - strand at 267.887 kb on + strand, within GFF2206 at 267.922 kb on + strand, within GFF2206 at 267.923 kb on - strand, within GFF2206 at 267.923 kb on - strand, within GFF2206 at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.560 kb on + strand at 268.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 265,603 + GFF2202 0.78 +1.3 265,790 + GFF2203 0.17 +0.6 265,985 + GFF2203 0.58 -0.4 265,990 + GFF2203 0.59 -1.4 265,999 - GFF2203 0.61 -1.3 266,071 - GFF2203 0.76 -0.1 266,311 + GFF2204 0.40 -0.1 266,311 + GFF2204 0.40 -0.1 266,312 - GFF2204 0.41 +1.1 266,425 + GFF2204 0.89 +1.9 266,606 - +0.3 266,937 + GFF2205 0.35 -0.0 267,120 + GFF2205 0.53 -0.0 267,196 + GFF2205 0.61 +0.1 267,197 - GFF2205 0.61 +1.1 267,197 - GFF2205 0.61 +3.7 267,198 + GFF2205 0.61 +0.1 267,198 + GFF2205 0.61 +1.3 267,199 - GFF2205 0.61 -1.4 267,199 - GFF2205 0.61 -0.1 267,360 + GFF2205 0.78 -0.7 267,360 + GFF2205 0.78 +0.0 267,360 + GFF2205 0.78 -0.5 267,563 + +1.7 267,564 - +0.3 267,887 + GFF2206 0.32 -0.8 267,922 + GFF2206 0.36 +0.1 267,923 - GFF2206 0.36 +1.7 267,923 - GFF2206 0.36 +0.1 268,560 + +0.2 268,560 + -0.1 268,560 + +0.7 268,560 + -0.4 268,560 + +0.2 268,561 - +0.9
Or see this region's nucleotide sequence