Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2195 and GFF2196 are separated by 198 nucleotides GFF2196 and GFF2197 are separated by 24 nucleotides
GFF2195 - FIG00732904: hypothetical protein, at 253,431 to 256,526
GFF2195
GFF2196 - no description, at 256,725 to 256,871
GFF2196
GFF2197 - Type I secretion system ATPase, LssB family LapB, at 256,896 to 258,713
GFF2197
Position (kb) 256
257 Strain fitness (log2 ratio) -1
0
1
2
3 at 255.882 kb on + strand, within GFF2195 at 255.882 kb on + strand, within GFF2195 at 255.882 kb on + strand, within GFF2195 at 255.883 kb on - strand, within GFF2195 at 256.159 kb on - strand, within GFF2195 at 256.159 kb on - strand, within GFF2195 at 256.160 kb on - strand, within GFF2195 at 256.553 kb on + strand at 256.785 kb on + strand, within GFF2196 at 256.785 kb on + strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.786 kb on - strand, within GFF2196 at 256.833 kb on + strand, within GFF2196 at 256.834 kb on - strand, within GFF2196 at 256.855 kb on - strand, within GFF2196 at 257.082 kb on + strand, within GFF2197 at 257.083 kb on - strand, within GFF2197 at 257.083 kb on - strand, within GFF2197 at 257.307 kb on + strand, within GFF2197 at 257.307 kb on + strand, within GFF2197 at 257.307 kb on + strand, within GFF2197 at 257.308 kb on - strand, within GFF2197 at 257.308 kb on - strand, within GFF2197 at 257.625 kb on + strand, within GFF2197 at 257.626 kb on - strand, within GFF2197 at 257.626 kb on - strand, within GFF2197
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 255,882 + GFF2195 0.79 +3.1 255,882 + GFF2195 0.79 +2.8 255,882 + GFF2195 0.79 -0.3 255,883 - GFF2195 0.79 +1.0 256,159 - GFF2195 0.88 +0.9 256,159 - GFF2195 0.88 +1.2 256,160 - GFF2195 0.88 -0.3 256,553 + -0.1 256,785 + GFF2196 0.41 -0.5 256,785 + GFF2196 0.41 -0.1 256,786 - GFF2196 0.41 +0.5 256,786 - GFF2196 0.41 -0.0 256,786 - GFF2196 0.41 -0.9 256,786 - GFF2196 0.41 -0.4 256,786 - GFF2196 0.41 -0.2 256,833 + GFF2196 0.73 -0.3 256,834 - GFF2196 0.74 -1.6 256,855 - GFF2196 0.88 -0.1 257,082 + GFF2197 0.10 -0.5 257,083 - GFF2197 0.10 -1.5 257,083 - GFF2197 0.10 +0.3 257,307 + GFF2197 0.23 -1.1 257,307 + GFF2197 0.23 +0.5 257,307 + GFF2197 0.23 -0.3 257,308 - GFF2197 0.23 +1.6 257,308 - GFF2197 0.23 -0.9 257,625 + GFF2197 0.40 +0.2 257,626 - GFF2197 0.40 -1.1 257,626 - GFF2197 0.40 -0.1
Or see this region's nucleotide sequence