Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2162 and GFF2163 are separated by 287 nucleotides GFF2163 and GFF2164 are separated by 158 nucleotides
GFF2162 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 214,758 to 215,504
GFF2162
GFF2163 - hypothetical protein, at 215,792 to 216,883
GFF2163
GFF2164 - Transcriptional regulator, IclR family, at 217,042 to 217,884
GFF2164
Position (kb) 215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 215.097 kb on + strand, within GFF2162 at 215.097 kb on + strand, within GFF2162 at 215.097 kb on + strand, within GFF2162 at 215.097 kb on + strand, within GFF2162 at 215.097 kb on + strand, within GFF2162 at 215.097 kb on + strand, within GFF2162 at 215.097 kb on + strand, within GFF2162 at 215.097 kb on + strand, within GFF2162 at 215.098 kb on - strand, within GFF2162 at 215.098 kb on - strand, within GFF2162 at 215.098 kb on - strand, within GFF2162 at 215.098 kb on - strand, within GFF2162 at 215.254 kb on + strand, within GFF2162 at 215.255 kb on - strand, within GFF2162 at 215.255 kb on - strand, within GFF2162 at 215.334 kb on + strand, within GFF2162 at 215.334 kb on + strand, within GFF2162 at 215.334 kb on + strand, within GFF2162 at 215.335 kb on - strand, within GFF2162 at 215.335 kb on - strand, within GFF2162 at 215.335 kb on - strand, within GFF2162 at 215.335 kb on - strand, within GFF2162 at 215.588 kb on + strand at 215.588 kb on + strand at 215.589 kb on - strand at 215.589 kb on - strand at 215.600 kb on - strand at 215.720 kb on + strand at 215.720 kb on + strand at 215.720 kb on + strand at 215.720 kb on + strand at 215.720 kb on + strand at 215.720 kb on + strand at 215.720 kb on + strand at 215.721 kb on - strand at 215.721 kb on - strand at 215.721 kb on - strand at 215.721 kb on - strand at 215.721 kb on - strand at 215.721 kb on - strand at 215.721 kb on - strand at 215.769 kb on + strand at 215.769 kb on + strand at 215.769 kb on + strand at 215.769 kb on + strand at 215.770 kb on - strand at 215.770 kb on - strand at 215.770 kb on - strand at 215.793 kb on + strand at 215.793 kb on + strand at 215.793 kb on + strand at 215.794 kb on - strand at 215.794 kb on - strand at 215.794 kb on - strand at 215.794 kb on - strand at 215.961 kb on + strand, within GFF2163 at 215.962 kb on - strand, within GFF2163 at 216.284 kb on + strand, within GFF2163 at 216.284 kb on + strand, within GFF2163 at 216.284 kb on + strand, within GFF2163 at 216.285 kb on - strand, within GFF2163 at 216.285 kb on - strand, within GFF2163 at 216.285 kb on - strand, within GFF2163 at 216.309 kb on + strand, within GFF2163 at 216.337 kb on - strand, within GFF2163 at 216.337 kb on - strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.396 kb on + strand, within GFF2163 at 216.397 kb on - strand, within GFF2163 at 216.397 kb on - strand, within GFF2163 at 216.397 kb on - strand, within GFF2163 at 216.397 kb on - strand, within GFF2163 at 216.433 kb on - strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.471 kb on + strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.472 kb on - strand, within GFF2163 at 216.540 kb on + strand, within GFF2163 at 216.540 kb on + strand, within GFF2163 at 216.540 kb on + strand, within GFF2163 at 216.541 kb on - strand, within GFF2163 at 216.541 kb on - strand, within GFF2163 at 216.541 kb on - strand, within GFF2163 at 216.541 kb on - strand, within GFF2163 at 216.570 kb on + strand, within GFF2163 at 216.570 kb on + strand, within GFF2163 at 216.570 kb on + strand, within GFF2163 at 216.570 kb on + strand, within GFF2163 at 216.571 kb on - strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.705 kb on + strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.706 kb on - strand, within GFF2163 at 216.724 kb on - strand, within GFF2163 at 216.724 kb on - strand, within GFF2163 at 216.831 kb on + strand at 216.831 kb on + strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.832 kb on - strand at 216.925 kb on + strand at 216.926 kb on - strand at 217.012 kb on + strand at 217.013 kb on - strand at 217.033 kb on + strand at 217.034 kb on - strand at 217.275 kb on - strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.394 kb on + strand, within GFF2164 at 217.395 kb on - strand, within GFF2164 at 217.395 kb on - strand, within GFF2164 at 217.424 kb on + strand, within GFF2164 at 217.424 kb on + strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.425 kb on - strand, within GFF2164 at 217.646 kb on + strand, within GFF2164 at 217.700 kb on + strand, within GFF2164 at 217.700 kb on + strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.701 kb on - strand, within GFF2164 at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.876 kb on + strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.878 kb on + strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand at 217.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 215,097 + GFF2162 0.45 +1.9 215,097 + GFF2162 0.45 +0.5 215,097 + GFF2162 0.45 +3.3 215,097 + GFF2162 0.45 +0.1 215,097 + GFF2162 0.45 -0.2 215,097 + GFF2162 0.45 +1.2 215,097 + GFF2162 0.45 +0.7 215,097 + GFF2162 0.45 +0.0 215,098 - GFF2162 0.46 -0.1 215,098 - GFF2162 0.46 +0.4 215,098 - GFF2162 0.46 +1.9 215,098 - GFF2162 0.46 +0.9 215,254 + GFF2162 0.66 +0.2 215,255 - GFF2162 0.67 +0.5 215,255 - GFF2162 0.67 +0.5 215,334 + GFF2162 0.77 +0.0 215,334 + GFF2162 0.77 +0.3 215,334 + GFF2162 0.77 -1.3 215,335 - GFF2162 0.77 +0.5 215,335 - GFF2162 0.77 +0.6 215,335 - GFF2162 0.77 -0.1 215,335 - GFF2162 0.77 +0.0 215,588 + +0.3 215,588 + +0.3 215,589 - -0.5 215,589 - -0.5 215,600 - +0.9 215,720 + +1.3 215,720 + +1.4 215,720 + +0.3 215,720 + +0.1 215,720 + +0.4 215,720 + -0.1 215,720 + +5.2 215,721 - +0.6 215,721 - +0.3 215,721 - +0.1 215,721 - -1.1 215,721 - -0.1 215,721 - -0.4 215,721 - -2.8 215,769 + -0.5 215,769 + +0.2 215,769 + -1.1 215,769 + +0.2 215,770 - -0.1 215,770 - +1.0 215,770 - +0.4 215,793 + -1.3 215,793 + +0.6 215,793 + +0.2 215,794 - +0.3 215,794 - -0.7 215,794 - -0.4 215,794 - +0.2 215,961 + GFF2163 0.15 +0.1 215,962 - GFF2163 0.16 -0.3 216,284 + GFF2163 0.45 +1.7 216,284 + GFF2163 0.45 -1.1 216,284 + GFF2163 0.45 -0.6 216,285 - GFF2163 0.45 +0.4 216,285 - GFF2163 0.45 +0.3 216,285 - GFF2163 0.45 +0.6 216,309 + GFF2163 0.47 -0.1 216,337 - GFF2163 0.50 -0.1 216,337 - GFF2163 0.50 +1.3 216,396 + GFF2163 0.55 +0.2 216,396 + GFF2163 0.55 -1.0 216,396 + GFF2163 0.55 -0.3 216,396 + GFF2163 0.55 -0.7 216,396 + GFF2163 0.55 +0.6 216,397 - GFF2163 0.55 +0.6 216,397 - GFF2163 0.55 -0.1 216,397 - GFF2163 0.55 -1.1 216,397 - GFF2163 0.55 -0.5 216,433 - GFF2163 0.59 -0.2 216,471 + GFF2163 0.62 -0.2 216,471 + GFF2163 0.62 -0.8 216,471 + GFF2163 0.62 -1.0 216,471 + GFF2163 0.62 -0.1 216,471 + GFF2163 0.62 -0.4 216,471 + GFF2163 0.62 -0.1 216,471 + GFF2163 0.62 +0.5 216,471 + GFF2163 0.62 +1.9 216,471 + GFF2163 0.62 -0.5 216,471 + GFF2163 0.62 -0.5 216,472 - GFF2163 0.62 -0.1 216,472 - GFF2163 0.62 -0.5 216,472 - GFF2163 0.62 -0.1 216,472 - GFF2163 0.62 +0.5 216,472 - GFF2163 0.62 -1.3 216,472 - GFF2163 0.62 +0.4 216,472 - GFF2163 0.62 -0.5 216,472 - GFF2163 0.62 -0.6 216,472 - GFF2163 0.62 +1.2 216,472 - GFF2163 0.62 -0.1 216,472 - GFF2163 0.62 +0.5 216,472 - GFF2163 0.62 +0.1 216,540 + GFF2163 0.68 -0.8 216,540 + GFF2163 0.68 +0.0 216,540 + GFF2163 0.68 +0.6 216,541 - GFF2163 0.69 -0.1 216,541 - GFF2163 0.69 -0.2 216,541 - GFF2163 0.69 -0.4 216,541 - GFF2163 0.69 -1.5 216,570 + GFF2163 0.71 -0.3 216,570 + GFF2163 0.71 +0.3 216,570 + GFF2163 0.71 -0.4 216,570 + GFF2163 0.71 +0.2 216,571 - GFF2163 0.71 -0.3 216,705 + GFF2163 0.84 -0.9 216,705 + GFF2163 0.84 -0.4 216,705 + GFF2163 0.84 +0.0 216,705 + GFF2163 0.84 -0.8 216,705 + GFF2163 0.84 -1.4 216,705 + GFF2163 0.84 +0.4 216,706 - GFF2163 0.84 -0.7 216,706 - GFF2163 0.84 -0.3 216,706 - GFF2163 0.84 -0.9 216,706 - GFF2163 0.84 +0.0 216,706 - GFF2163 0.84 -1.1 216,706 - GFF2163 0.84 -0.3 216,706 - GFF2163 0.84 +0.2 216,706 - GFF2163 0.84 +0.2 216,706 - GFF2163 0.84 +0.7 216,706 - GFF2163 0.84 -0.8 216,706 - GFF2163 0.84 -0.9 216,724 - GFF2163 0.85 -1.0 216,724 - GFF2163 0.85 -0.2 216,831 + -1.5 216,831 + -0.1 216,832 - -1.4 216,832 - +0.5 216,832 - -0.2 216,832 - -0.5 216,832 - +0.1 216,832 - -0.1 216,832 - -0.5 216,832 - -0.1 216,925 + -1.2 216,926 - -0.7 217,012 + +0.2 217,013 - -0.4 217,033 + -0.8 217,034 - +0.7 217,275 - GFF2164 0.28 -0.9 217,394 + GFF2164 0.42 -1.0 217,394 + GFF2164 0.42 -0.3 217,394 + GFF2164 0.42 +1.6 217,395 - GFF2164 0.42 -0.9 217,395 - GFF2164 0.42 -0.4 217,424 + GFF2164 0.45 -0.2 217,424 + GFF2164 0.45 -0.4 217,425 - GFF2164 0.45 -0.4 217,425 - GFF2164 0.45 -0.6 217,425 - GFF2164 0.45 -0.8 217,425 - GFF2164 0.45 -1.1 217,425 - GFF2164 0.45 -0.0 217,425 - GFF2164 0.45 +0.0 217,646 + GFF2164 0.72 -0.1 217,700 + GFF2164 0.78 +0.1 217,700 + GFF2164 0.78 -1.1 217,701 - GFF2164 0.78 +0.7 217,701 - GFF2164 0.78 -1.2 217,701 - GFF2164 0.78 +0.3 217,701 - GFF2164 0.78 +0.3 217,876 + +0.3 217,876 + -0.9 217,876 + -0.1 217,876 + -0.6 217,876 + -1.4 217,876 + -0.2 217,876 + +0.8 217,876 + -1.3 217,876 + -1.2 217,876 + -0.0 217,876 + -0.8 217,876 + +4.0 217,876 + +0.1 217,876 + -1.5 217,877 - +1.6 217,877 - -0.9 217,877 - +0.6 217,877 - -0.4 217,877 - +0.2 217,877 - -2.2 217,877 - -0.2 217,877 - +0.3 217,877 - -0.7 217,877 - -0.5 217,877 - -0.7 217,877 - -0.6 217,877 - -0.7 217,877 - -0.9 217,877 - -0.2 217,878 + -0.2 217,878 + -0.8 217,878 + -0.7 217,878 + +0.3 217,878 + +0.1 217,878 + -0.2 217,878 + -0.7 217,878 + +0.1 217,879 - -1.1 217,879 - -1.6 217,879 - +0.2 217,879 - -0.8 217,879 - -1.5 217,879 - -0.8 217,879 - -0.6 217,879 - -0.4 217,879 - -1.0
Or see this region's nucleotide sequence