Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2134 and GFF2135 are separated by 22 nucleotides GFF2135 and GFF2136 overlap by 4 nucleotides GFF2136 and GFF2137 overlap by 4 nucleotides
GFF2134 - probable iron-sulfur binding protein YPO1417, at 183,331 to 184,212
GFF2134
GFF2135 - D-ribose pyranase (EC 5.4.99.62), at 184,235 to 184,627
GFF2135
GFF2136 - Ribokinase (EC 2.7.1.15), at 184,624 to 185,589
GFF2136
GFF2137 - Ribose operon repressor, at 185,586 to 186,683
GFF2137
Position (kb) 184
185
186 Strain fitness (log2 ratio) -1
0
1
2 at 183.649 kb on + strand, within GFF2134 at 183.812 kb on - strand, within GFF2134 at 184.090 kb on + strand, within GFF2134 at 184.198 kb on + strand at 184.198 kb on + strand at 184.198 kb on + strand at 184.199 kb on - strand at 184.199 kb on - strand at 184.292 kb on - strand, within GFF2135 at 184.292 kb on - strand, within GFF2135 at 184.741 kb on + strand, within GFF2136 at 184.742 kb on - strand, within GFF2136 at 185.004 kb on - strand, within GFF2136 at 185.203 kb on + strand, within GFF2136 at 185.204 kb on - strand, within GFF2136 at 185.204 kb on - strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.828 kb on - strand, within GFF2137 at 186.365 kb on - strand, within GFF2137 at 186.415 kb on + strand, within GFF2137 at 186.466 kb on + strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.551 kb on - strand, within GFF2137 at 186.551 kb on - strand, within GFF2137
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 183,649 + GFF2134 0.36 -0.7 183,812 - GFF2134 0.55 +0.3 184,090 + GFF2134 0.86 +1.2 184,198 + -0.8 184,198 + -0.4 184,198 + -0.2 184,199 - +2.5 184,199 - -1.1 184,292 - GFF2135 0.15 -0.7 184,292 - GFF2135 0.15 +0.3 184,741 + GFF2136 0.12 -1.7 184,742 - GFF2136 0.12 +0.3 185,004 - GFF2136 0.39 -0.8 185,203 + GFF2136 0.60 -0.1 185,204 - GFF2136 0.60 +0.1 185,204 - GFF2136 0.60 +0.2 185,448 + GFF2136 0.85 +1.3 185,448 + GFF2136 0.85 +1.5 185,448 + GFF2136 0.85 +1.9 185,828 - GFF2137 0.22 -0.3 186,365 - GFF2137 0.71 +0.5 186,415 + GFF2137 0.76 -0.4 186,466 + GFF2137 0.80 +0.0 186,467 - GFF2137 0.80 -0.9 186,467 - GFF2137 0.80 +0.4 186,467 - GFF2137 0.80 +1.2 186,550 + GFF2137 0.88 -0.7 186,550 + GFF2137 0.88 -1.4 186,550 + GFF2137 0.88 -1.6 186,551 - GFF2137 0.88 +1.1 186,551 - GFF2137 0.88 +0.8
Or see this region's nucleotide sequence