Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2118 and GFF2119 overlap by 4 nucleotides GFF2119 and GFF2120 overlap by 4 nucleotides GFF2120 and GFF2121 are separated by 25 nucleotides
GFF2118 - hypothetical protein, at 167,903 to 168,460
GFF2118
GFF2119 - Type IV fimbrial biogenesis protein PilW, at 168,457 to 169,221
GFF2119
GFF2120 - Type IV fimbrial biogenesis protein PilX, at 169,218 to 169,799
GFF2120
GFF2121 - Type IV fimbrial biogenesis protein PilY1, at 169,825 to 173,256
GFF2121
Position (kb) 169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 168.245 kb on + strand, within GFF2118 at 168.290 kb on - strand, within GFF2118 at 168.293 kb on + strand, within GFF2118 at 168.371 kb on + strand, within GFF2118 at 168.372 kb on - strand, within GFF2118 at 168.447 kb on - strand at 168.829 kb on + strand, within GFF2119 at 168.829 kb on + strand, within GFF2119 at 168.915 kb on + strand, within GFF2119 at 168.916 kb on - strand, within GFF2119 at 168.916 kb on - strand, within GFF2119 at 168.916 kb on - strand, within GFF2119 at 169.027 kb on + strand, within GFF2119 at 169.027 kb on + strand, within GFF2119 at 169.027 kb on + strand, within GFF2119 at 169.028 kb on - strand, within GFF2119 at 169.028 kb on - strand, within GFF2119 at 169.028 kb on - strand, within GFF2119 at 169.028 kb on - strand, within GFF2119 at 169.028 kb on - strand, within GFF2119 at 169.028 kb on - strand, within GFF2119 at 169.028 kb on - strand, within GFF2119 at 169.235 kb on + strand at 169.338 kb on + strand, within GFF2120 at 169.339 kb on - strand, within GFF2120 at 169.339 kb on - strand, within GFF2120 at 169.339 kb on - strand, within GFF2120 at 169.339 kb on - strand, within GFF2120 at 169.507 kb on + strand, within GFF2120 at 169.563 kb on + strand, within GFF2120 at 169.629 kb on + strand, within GFF2120 at 169.630 kb on - strand, within GFF2120 at 169.633 kb on - strand, within GFF2120 at 169.660 kb on - strand, within GFF2120 at 169.758 kb on + strand at 169.759 kb on - strand at 169.942 kb on + strand at 169.942 kb on + strand at 169.943 kb on - strand at 170.029 kb on + strand at 170.029 kb on + strand at 170.029 kb on + strand at 170.030 kb on - strand at 170.033 kb on - strand at 170.033 kb on - strand at 170.033 kb on - strand at 170.126 kb on + strand at 170.198 kb on + strand, within GFF2121 at 170.230 kb on + strand, within GFF2121 at 170.230 kb on + strand, within GFF2121 at 170.283 kb on - strand, within GFF2121 at 170.297 kb on - strand, within GFF2121 at 170.336 kb on - strand, within GFF2121 at 170.363 kb on - strand, within GFF2121 at 170.384 kb on - strand, within GFF2121 at 170.550 kb on - strand, within GFF2121 at 170.614 kb on + strand, within GFF2121 at 170.614 kb on + strand, within GFF2121 at 170.614 kb on + strand, within GFF2121 at 170.614 kb on + strand, within GFF2121 at 170.615 kb on - strand, within GFF2121 at 170.746 kb on + strand, within GFF2121 at 170.746 kb on + strand, within GFF2121 at 170.746 kb on + strand, within GFF2121 at 170.747 kb on - strand, within GFF2121 at 170.747 kb on - strand, within GFF2121 at 170.747 kb on - strand, within GFF2121
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 168,245 + GFF2118 0.61 +1.9 168,290 - GFF2118 0.69 -0.4 168,293 + GFF2118 0.70 -1.1 168,371 + GFF2118 0.84 +0.9 168,372 - GFF2118 0.84 +0.4 168,447 - +0.7 168,829 + GFF2119 0.49 -0.0 168,829 + GFF2119 0.49 +0.3 168,915 + GFF2119 0.60 +0.0 168,916 - GFF2119 0.60 -0.7 168,916 - GFF2119 0.60 +0.3 168,916 - GFF2119 0.60 -0.9 169,027 + GFF2119 0.75 -0.4 169,027 + GFF2119 0.75 +0.5 169,027 + GFF2119 0.75 +1.9 169,028 - GFF2119 0.75 +0.6 169,028 - GFF2119 0.75 +1.9 169,028 - GFF2119 0.75 -0.2 169,028 - GFF2119 0.75 -1.1 169,028 - GFF2119 0.75 +0.5 169,028 - GFF2119 0.75 -0.5 169,028 - GFF2119 0.75 -0.3 169,235 + +2.1 169,338 + GFF2120 0.21 -0.1 169,339 - GFF2120 0.21 +0.3 169,339 - GFF2120 0.21 -3.0 169,339 - GFF2120 0.21 +0.3 169,339 - GFF2120 0.21 +4.5 169,507 + GFF2120 0.50 -0.4 169,563 + GFF2120 0.59 +0.5 169,629 + GFF2120 0.71 -0.3 169,630 - GFF2120 0.71 -0.1 169,633 - GFF2120 0.71 +0.3 169,660 - GFF2120 0.76 -0.5 169,758 + -0.4 169,759 - +0.5 169,942 + +1.0 169,942 + +0.1 169,943 - -1.0 170,029 + -0.4 170,029 + -0.1 170,029 + +0.6 170,030 - -0.5 170,033 - -0.4 170,033 - -0.5 170,033 - +0.6 170,126 + +1.5 170,198 + GFF2121 0.11 +0.6 170,230 + GFF2121 0.12 -0.3 170,230 + GFF2121 0.12 -0.1 170,283 - GFF2121 0.13 +0.8 170,297 - GFF2121 0.14 +1.3 170,336 - GFF2121 0.15 +0.0 170,363 - GFF2121 0.16 +0.3 170,384 - GFF2121 0.16 -0.2 170,550 - GFF2121 0.21 -0.1 170,614 + GFF2121 0.23 -0.1 170,614 + GFF2121 0.23 -0.2 170,614 + GFF2121 0.23 -0.4 170,614 + GFF2121 0.23 -0.3 170,615 - GFF2121 0.23 +0.4 170,746 + GFF2121 0.27 -1.8 170,746 + GFF2121 0.27 -0.4 170,746 + GFF2121 0.27 +0.4 170,747 - GFF2121 0.27 -0.2 170,747 - GFF2121 0.27 -0.4 170,747 - GFF2121 0.27 +1.3
Or see this region's nucleotide sequence