Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2096 and GFF2097 are separated by 86 nucleotides GFF2097 and GFF2098 are separated by 44 nucleotides
GFF2096 - Acyl-CoA dehydrogenase family protein, at 144,077 to 145,228
GFF2096
GFF2097 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 145,315 to 146,427
GFF2097
GFF2098 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 146,472 to 148,031
GFF2098
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.347 kb on + strand, within GFF2096 at 144.347 kb on + strand, within GFF2096 at 144.869 kb on + strand, within GFF2096 at 145.139 kb on + strand at 145.139 kb on + strand at 145.139 kb on + strand at 145.338 kb on - strand at 145.338 kb on - strand at 145.699 kb on + strand, within GFF2097 at 145.699 kb on + strand, within GFF2097 at 145.699 kb on + strand, within GFF2097 at 145.700 kb on - strand, within GFF2097 at 145.700 kb on - strand, within GFF2097 at 145.700 kb on - strand, within GFF2097 at 145.769 kb on - strand, within GFF2097 at 145.769 kb on - strand, within GFF2097 at 145.769 kb on - strand, within GFF2097 at 145.769 kb on - strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.909 kb on + strand, within GFF2097 at 145.910 kb on - strand, within GFF2097 at 145.910 kb on - strand, within GFF2097 at 145.910 kb on - strand, within GFF2097 at 145.910 kb on - strand, within GFF2097 at 145.981 kb on + strand, within GFF2097 at 145.981 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.990 kb on + strand, within GFF2097 at 145.991 kb on - strand, within GFF2097 at 145.991 kb on - strand, within GFF2097 at 146.670 kb on + strand, within GFF2098 at 146.671 kb on - strand, within GFF2098 at 146.965 kb on - strand, within GFF2098 at 146.965 kb on - strand, within GFF2098 at 146.965 kb on - strand, within GFF2098 at 146.965 kb on - strand, within GFF2098 at 146.965 kb on - strand, within GFF2098 at 146.965 kb on - strand, within GFF2098 at 146.965 kb on - strand, within GFF2098 at 147.309 kb on + strand, within GFF2098 at 147.309 kb on + strand, within GFF2098 at 147.387 kb on + strand, within GFF2098 at 147.388 kb on - strand, within GFF2098
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 144,347 + GFF2096 0.23 +0.8 144,347 + GFF2096 0.23 +0.3 144,869 + GFF2096 0.69 +0.9 145,139 + +0.1 145,139 + -0.2 145,139 + +0.1 145,338 - -0.6 145,338 - -0.6 145,699 + GFF2097 0.35 +0.0 145,699 + GFF2097 0.35 +0.2 145,699 + GFF2097 0.35 -0.3 145,700 - GFF2097 0.35 +0.8 145,700 - GFF2097 0.35 +0.2 145,700 - GFF2097 0.35 -0.1 145,769 - GFF2097 0.41 -1.3 145,769 - GFF2097 0.41 -1.2 145,769 - GFF2097 0.41 +0.0 145,769 - GFF2097 0.41 +0.7 145,909 + GFF2097 0.53 +0.5 145,909 + GFF2097 0.53 +0.5 145,909 + GFF2097 0.53 -0.4 145,909 + GFF2097 0.53 +2.3 145,909 + GFF2097 0.53 -0.7 145,909 + GFF2097 0.53 -0.4 145,910 - GFF2097 0.53 -0.2 145,910 - GFF2097 0.53 +0.2 145,910 - GFF2097 0.53 -0.9 145,910 - GFF2097 0.53 -0.1 145,981 + GFF2097 0.60 +0.3 145,981 + GFF2097 0.60 +0.7 145,990 + GFF2097 0.61 -1.3 145,990 + GFF2097 0.61 -0.7 145,990 + GFF2097 0.61 -0.3 145,990 + GFF2097 0.61 +0.3 145,990 + GFF2097 0.61 -0.1 145,991 - GFF2097 0.61 -1.2 145,991 - GFF2097 0.61 +1.6 146,670 + GFF2098 0.13 +0.2 146,671 - GFF2098 0.13 -1.4 146,965 - GFF2098 0.32 -0.2 146,965 - GFF2098 0.32 -1.9 146,965 - GFF2098 0.32 -0.1 146,965 - GFF2098 0.32 -0.6 146,965 - GFF2098 0.32 +1.1 146,965 - GFF2098 0.32 -0.9 146,965 - GFF2098 0.32 +0.3 147,309 + GFF2098 0.54 +0.8 147,309 + GFF2098 0.54 -1.0 147,387 + GFF2098 0.59 -0.6 147,388 - GFF2098 0.59 +0.2
Or see this region's nucleotide sequence