Strain Fitness in Variovorax sp. SCN45 around GFF2095

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2094 and GFF2095 are separated by 96 nucleotidesGFF2095 and GFF2096 are separated by 10 nucleotides GFF2094 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54) homolog, at 141,904 to 142,773 GFF2094 GFF2095 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 142,870 to 144,066 GFF2095 GFF2096 - Acyl-CoA dehydrogenase family protein, at 144,077 to 145,228 GFF2096 Position (kb) 142 143 144 145Strain fitness (log2 ratio) -1 0 1at 142.147 kb on + strand, within GFF2094at 142.148 kb on - strand, within GFF2094at 142.255 kb on + strand, within GFF2094at 142.255 kb on + strand, within GFF2094at 142.256 kb on - strand, within GFF2094at 142.256 kb on - strand, within GFF2094at 142.387 kb on + strand, within GFF2094at 142.388 kb on - strand, within GFF2094at 142.468 kb on + strand, within GFF2094at 142.486 kb on + strand, within GFF2094at 142.486 kb on + strand, within GFF2094at 142.487 kb on - strand, within GFF2094at 142.487 kb on - strand, within GFF2094at 142.520 kb on - strand, within GFF2094at 142.520 kb on - strand, within GFF2094at 142.520 kb on - strand, within GFF2094at 142.520 kb on - strand, within GFF2094at 142.633 kb on + strand, within GFF2094at 142.633 kb on + strand, within GFF2094at 143.098 kb on + strand, within GFF2095at 143.098 kb on + strand, within GFF2095at 143.098 kb on + strand, within GFF2095at 143.099 kb on - strand, within GFF2095at 143.099 kb on - strand, within GFF2095at 143.242 kb on + strand, within GFF2095at 143.242 kb on + strand, within GFF2095at 143.242 kb on + strand, within GFF2095at 143.243 kb on - strand, within GFF2095at 143.243 kb on - strand, within GFF2095at 143.257 kb on + strand, within GFF2095at 143.258 kb on - strand, within GFF2095at 143.326 kb on + strand, within GFF2095at 143.327 kb on - strand, within GFF2095at 143.327 kb on - strand, within GFF2095at 143.327 kb on - strand, within GFF2095at 143.368 kb on + strand, within GFF2095at 143.369 kb on - strand, within GFF2095at 143.590 kb on + strand, within GFF2095at 143.590 kb on + strand, within GFF2095at 143.590 kb on + strand, within GFF2095at 143.590 kb on + strand, within GFF2095at 143.590 kb on + strand, within GFF2095at 143.591 kb on - strand, within GFF2095at 143.591 kb on - strand, within GFF2095at 143.896 kb on + strand, within GFF2095at 143.896 kb on + strand, within GFF2095at 144.007 kb on + strandat 144.007 kb on + strandat 144.007 kb on + strandat 144.007 kb on + strandat 144.007 kb on + strandat 144.347 kb on + strand, within GFF2096at 144.347 kb on + strand, within GFF2096at 144.869 kb on + strand, within GFF2096

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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142,147 + GFF2094 0.28 -0.1
142,148 - GFF2094 0.28 -0.4
142,255 + GFF2094 0.40 +1.0
142,255 + GFF2094 0.40 -0.7
142,256 - GFF2094 0.40 -0.7
142,256 - GFF2094 0.40 -1.1
142,387 + GFF2094 0.56 +0.3
142,388 - GFF2094 0.56 -1.4
142,468 + GFF2094 0.65 -1.7
142,486 + GFF2094 0.67 -0.6
142,486 + GFF2094 0.67 -0.7
142,487 - GFF2094 0.67 -0.0
142,487 - GFF2094 0.67 -0.1
142,520 - GFF2094 0.71 +0.2
142,520 - GFF2094 0.71 +0.3
142,520 - GFF2094 0.71 -0.9
142,520 - GFF2094 0.71 -1.3
142,633 + GFF2094 0.84 +0.2
142,633 + GFF2094 0.84 +0.1
143,098 + GFF2095 0.19 -0.3
143,098 + GFF2095 0.19 +0.7
143,098 + GFF2095 0.19 +0.9
143,099 - GFF2095 0.19 +0.6
143,099 - GFF2095 0.19 -1.0
143,242 + GFF2095 0.31 +0.3
143,242 + GFF2095 0.31 +0.5
143,242 + GFF2095 0.31 -0.7
143,243 - GFF2095 0.31 +0.0
143,243 - GFF2095 0.31 -0.3
143,257 + GFF2095 0.32 -0.7
143,258 - GFF2095 0.32 -0.5
143,326 + GFF2095 0.38 -0.1
143,327 - GFF2095 0.38 +0.1
143,327 - GFF2095 0.38 +0.0
143,327 - GFF2095 0.38 -0.6
143,368 + GFF2095 0.42 -0.2
143,369 - GFF2095 0.42 -0.2
143,590 + GFF2095 0.60 -1.0
143,590 + GFF2095 0.60 +1.6
143,590 + GFF2095 0.60 -0.4
143,590 + GFF2095 0.60 +0.0
143,590 + GFF2095 0.60 -0.8
143,591 - GFF2095 0.60 -0.6
143,591 - GFF2095 0.60 -1.0
143,896 + GFF2095 0.86 -1.5
143,896 + GFF2095 0.86 -0.9
144,007 + -0.1
144,007 + -0.3
144,007 + +0.1
144,007 + -0.1
144,007 + +0.2
144,347 + GFF2096 0.23 +0.8
144,347 + GFF2096 0.23 +0.3
144,869 + GFF2096 0.69 +0.9

Or see this region's nucleotide sequence