Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2093 and GFF2094 are separated by 94 nucleotides GFF2094 and GFF2095 are separated by 96 nucleotides
GFF2093 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 140,067 to 141,809
GFF2093
GFF2094 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54) homolog, at 141,904 to 142,773
GFF2094
GFF2095 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 142,870 to 144,066
GFF2095
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1 at 141.046 kb on + strand, within GFF2093 at 141.046 kb on + strand, within GFF2093 at 141.046 kb on + strand, within GFF2093 at 141.046 kb on + strand, within GFF2093 at 141.047 kb on - strand, within GFF2093 at 141.047 kb on - strand, within GFF2093 at 141.047 kb on - strand, within GFF2093 at 141.104 kb on - strand, within GFF2093 at 141.172 kb on + strand, within GFF2093 at 141.173 kb on - strand, within GFF2093 at 141.173 kb on - strand, within GFF2093 at 141.187 kb on + strand, within GFF2093 at 141.188 kb on - strand, within GFF2093 at 141.188 kb on - strand, within GFF2093 at 141.292 kb on + strand, within GFF2093 at 141.292 kb on + strand, within GFF2093 at 141.293 kb on - strand, within GFF2093 at 141.361 kb on + strand, within GFF2093 at 141.361 kb on + strand, within GFF2093 at 141.361 kb on + strand, within GFF2093 at 141.362 kb on - strand, within GFF2093 at 141.421 kb on + strand, within GFF2093 at 141.421 kb on + strand, within GFF2093 at 141.421 kb on + strand, within GFF2093 at 141.421 kb on + strand, within GFF2093 at 141.421 kb on + strand, within GFF2093 at 141.421 kb on + strand, within GFF2093 at 141.422 kb on - strand, within GFF2093 at 141.422 kb on - strand, within GFF2093 at 141.422 kb on - strand, within GFF2093 at 141.422 kb on - strand, within GFF2093 at 141.422 kb on - strand, within GFF2093 at 141.422 kb on - strand, within GFF2093 at 141.422 kb on - strand, within GFF2093 at 141.496 kb on + strand, within GFF2093 at 141.496 kb on + strand, within GFF2093 at 141.496 kb on + strand, within GFF2093 at 141.497 kb on - strand, within GFF2093 at 141.497 kb on - strand, within GFF2093 at 141.497 kb on - strand, within GFF2093 at 141.499 kb on + strand, within GFF2093 at 141.500 kb on - strand, within GFF2093 at 141.500 kb on - strand, within GFF2093 at 141.512 kb on - strand, within GFF2093 at 141.596 kb on - strand, within GFF2093 at 141.607 kb on + strand, within GFF2093 at 141.607 kb on + strand, within GFF2093 at 141.607 kb on + strand, within GFF2093 at 141.608 kb on - strand, within GFF2093 at 141.608 kb on - strand, within GFF2093 at 141.608 kb on - strand, within GFF2093 at 141.697 kb on + strand at 141.697 kb on + strand at 141.698 kb on - strand at 141.698 kb on - strand at 141.698 kb on - strand at 141.698 kb on - strand at 142.147 kb on + strand, within GFF2094 at 142.148 kb on - strand, within GFF2094 at 142.255 kb on + strand, within GFF2094 at 142.255 kb on + strand, within GFF2094 at 142.256 kb on - strand, within GFF2094 at 142.256 kb on - strand, within GFF2094 at 142.387 kb on + strand, within GFF2094 at 142.388 kb on - strand, within GFF2094 at 142.468 kb on + strand, within GFF2094 at 142.486 kb on + strand, within GFF2094 at 142.486 kb on + strand, within GFF2094 at 142.487 kb on - strand, within GFF2094 at 142.487 kb on - strand, within GFF2094 at 142.520 kb on - strand, within GFF2094 at 142.520 kb on - strand, within GFF2094 at 142.520 kb on - strand, within GFF2094 at 142.520 kb on - strand, within GFF2094 at 142.633 kb on + strand, within GFF2094 at 142.633 kb on + strand, within GFF2094 at 143.098 kb on + strand, within GFF2095 at 143.098 kb on + strand, within GFF2095 at 143.098 kb on + strand, within GFF2095 at 143.099 kb on - strand, within GFF2095 at 143.099 kb on - strand, within GFF2095 at 143.242 kb on + strand, within GFF2095 at 143.242 kb on + strand, within GFF2095 at 143.242 kb on + strand, within GFF2095 at 143.243 kb on - strand, within GFF2095 at 143.243 kb on - strand, within GFF2095 at 143.257 kb on + strand, within GFF2095 at 143.258 kb on - strand, within GFF2095 at 143.326 kb on + strand, within GFF2095 at 143.327 kb on - strand, within GFF2095 at 143.327 kb on - strand, within GFF2095 at 143.327 kb on - strand, within GFF2095 at 143.368 kb on + strand, within GFF2095 at 143.369 kb on - strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.590 kb on + strand, within GFF2095 at 143.591 kb on - strand, within GFF2095 at 143.591 kb on - strand, within GFF2095
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 141,046 + GFF2093 0.56 -0.1 141,046 + GFF2093 0.56 +0.8 141,046 + GFF2093 0.56 +0.3 141,046 + GFF2093 0.56 -0.4 141,047 - GFF2093 0.56 +0.7 141,047 - GFF2093 0.56 -0.2 141,047 - GFF2093 0.56 +0.3 141,104 - GFF2093 0.59 +0.5 141,172 + GFF2093 0.63 -0.1 141,173 - GFF2093 0.63 +0.1 141,173 - GFF2093 0.63 -1.3 141,187 + GFF2093 0.64 +0.3 141,188 - GFF2093 0.64 -1.5 141,188 - GFF2093 0.64 -1.0 141,292 + GFF2093 0.70 -0.3 141,292 + GFF2093 0.70 -0.4 141,293 - GFF2093 0.70 +0.9 141,361 + GFF2093 0.74 -1.8 141,361 + GFF2093 0.74 +0.6 141,361 + GFF2093 0.74 -0.4 141,362 - GFF2093 0.74 +0.0 141,421 + GFF2093 0.78 +0.4 141,421 + GFF2093 0.78 +0.2 141,421 + GFF2093 0.78 -0.1 141,421 + GFF2093 0.78 -0.9 141,421 + GFF2093 0.78 -0.3 141,421 + GFF2093 0.78 +0.5 141,422 - GFF2093 0.78 +0.6 141,422 - GFF2093 0.78 +0.7 141,422 - GFF2093 0.78 +0.7 141,422 - GFF2093 0.78 +0.9 141,422 - GFF2093 0.78 -1.2 141,422 - GFF2093 0.78 +0.1 141,422 - GFF2093 0.78 -1.5 141,496 + GFF2093 0.82 +0.8 141,496 + GFF2093 0.82 +0.2 141,496 + GFF2093 0.82 -0.1 141,497 - GFF2093 0.82 -0.2 141,497 - GFF2093 0.82 -0.5 141,497 - GFF2093 0.82 +0.7 141,499 + GFF2093 0.82 +0.0 141,500 - GFF2093 0.82 -0.3 141,500 - GFF2093 0.82 -0.5 141,512 - GFF2093 0.83 -0.6 141,596 - GFF2093 0.88 +0.4 141,607 + GFF2093 0.88 +0.4 141,607 + GFF2093 0.88 -0.3 141,607 + GFF2093 0.88 +0.7 141,608 - GFF2093 0.88 +0.9 141,608 - GFF2093 0.88 +1.1 141,608 - GFF2093 0.88 -0.2 141,697 + +0.3 141,697 + +0.5 141,698 - -0.7 141,698 - -0.6 141,698 - +0.2 141,698 - -2.1 142,147 + GFF2094 0.28 -0.1 142,148 - GFF2094 0.28 -0.4 142,255 + GFF2094 0.40 +1.0 142,255 + GFF2094 0.40 -0.7 142,256 - GFF2094 0.40 -0.7 142,256 - GFF2094 0.40 -1.1 142,387 + GFF2094 0.56 +0.3 142,388 - GFF2094 0.56 -1.4 142,468 + GFF2094 0.65 -1.7 142,486 + GFF2094 0.67 -0.6 142,486 + GFF2094 0.67 -0.7 142,487 - GFF2094 0.67 -0.0 142,487 - GFF2094 0.67 -0.1 142,520 - GFF2094 0.71 +0.2 142,520 - GFF2094 0.71 +0.3 142,520 - GFF2094 0.71 -0.9 142,520 - GFF2094 0.71 -1.3 142,633 + GFF2094 0.84 +0.2 142,633 + GFF2094 0.84 +0.1 143,098 + GFF2095 0.19 -0.3 143,098 + GFF2095 0.19 +0.7 143,098 + GFF2095 0.19 +0.9 143,099 - GFF2095 0.19 +0.6 143,099 - GFF2095 0.19 -1.0 143,242 + GFF2095 0.31 +0.3 143,242 + GFF2095 0.31 +0.5 143,242 + GFF2095 0.31 -0.7 143,243 - GFF2095 0.31 +0.0 143,243 - GFF2095 0.31 -0.3 143,257 + GFF2095 0.32 -0.7 143,258 - GFF2095 0.32 -0.5 143,326 + GFF2095 0.38 -0.1 143,327 - GFF2095 0.38 +0.1 143,327 - GFF2095 0.38 +0.0 143,327 - GFF2095 0.38 -0.6 143,368 + GFF2095 0.42 -0.2 143,369 - GFF2095 0.42 -0.2 143,590 + GFF2095 0.60 -1.0 143,590 + GFF2095 0.60 +1.6 143,590 + GFF2095 0.60 -0.4 143,590 + GFF2095 0.60 +0.0 143,590 + GFF2095 0.60 -0.8 143,591 - GFF2095 0.60 -0.6 143,591 - GFF2095 0.60 -1.0
Or see this region's nucleotide sequence