Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2083 and GFF2084 overlap by 4 nucleotides GFF2084 and GFF2085 overlap by 4 nucleotides GFF2085 and GFF2086 overlap by 4 nucleotides GFF2086 and GFF2087 overlap by 11 nucleotides
GFF2083 - putative periplasmic membrane protein, at 131,361 to 131,963
GFF2083
GFF2084 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 131,960 to 132,913
GFF2084
GFF2085 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 132,910 to 133,638
GFF2085
GFF2086 - hypothetical protein, at 133,635 to 134,084
GFF2086
GFF2087 - Ser/Thr and Tyr protein phosphatase (dual specificity), at 134,074 to 135,423
GFF2087
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1
2 at 131.976 kb on + strand at 131.994 kb on + strand at 131.994 kb on + strand at 131.995 kb on - strand at 132.186 kb on + strand, within GFF2084 at 132.187 kb on - strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.303 kb on + strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.304 kb on - strand, within GFF2084 at 132.522 kb on + strand, within GFF2084 at 132.522 kb on + strand, within GFF2084 at 132.523 kb on - strand, within GFF2084 at 132.523 kb on - strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.534 kb on + strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.535 kb on - strand, within GFF2084 at 132.544 kb on - strand, within GFF2084 at 132.544 kb on - strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.576 kb on + strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.577 kb on - strand, within GFF2084 at 132.597 kb on + strand, within GFF2084 at 132.598 kb on - strand, within GFF2084 at 132.639 kb on + strand, within GFF2084 at 132.640 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 132.670 kb on - strand, within GFF2084 at 133.367 kb on + strand, within GFF2085 at 133.367 kb on + strand, within GFF2085 at 133.367 kb on + strand, within GFF2085 at 133.466 kb on + strand, within GFF2085 at 133.466 kb on + strand, within GFF2085 at 133.467 kb on - strand, within GFF2085 at 133.891 kb on + strand, within GFF2086 at 133.891 kb on + strand, within GFF2086 at 133.892 kb on - strand, within GFF2086
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 131,976 + -0.1 131,994 + +0.1 131,994 + -0.1 131,995 - +0.1 132,186 + GFF2084 0.24 +1.3 132,187 - GFF2084 0.24 +0.6 132,303 + GFF2084 0.36 +0.1 132,303 + GFF2084 0.36 -1.5 132,303 + GFF2084 0.36 +0.7 132,303 + GFF2084 0.36 +2.2 132,304 - GFF2084 0.36 +0.1 132,304 - GFF2084 0.36 -0.1 132,304 - GFF2084 0.36 +0.9 132,304 - GFF2084 0.36 -0.7 132,304 - GFF2084 0.36 +0.5 132,522 + GFF2084 0.59 -0.6 132,522 + GFF2084 0.59 +0.9 132,523 - GFF2084 0.59 -0.4 132,523 - GFF2084 0.59 +1.2 132,534 + GFF2084 0.60 +0.4 132,534 + GFF2084 0.60 -0.4 132,534 + GFF2084 0.60 +0.0 132,535 - GFF2084 0.60 +0.0 132,535 - GFF2084 0.60 +2.5 132,535 - GFF2084 0.60 +0.1 132,535 - GFF2084 0.60 -0.4 132,535 - GFF2084 0.60 +0.1 132,544 - GFF2084 0.61 +0.0 132,544 - GFF2084 0.61 -0.1 132,576 + GFF2084 0.65 -0.2 132,576 + GFF2084 0.65 +0.3 132,576 + GFF2084 0.65 -0.7 132,576 + GFF2084 0.65 +0.5 132,577 - GFF2084 0.65 -0.3 132,577 - GFF2084 0.65 -0.6 132,577 - GFF2084 0.65 -0.6 132,577 - GFF2084 0.65 +0.0 132,577 - GFF2084 0.65 -1.0 132,597 + GFF2084 0.67 -0.1 132,598 - GFF2084 0.67 +0.7 132,639 + GFF2084 0.71 -0.3 132,640 - GFF2084 0.71 +0.4 132,670 - GFF2084 0.74 -0.5 132,670 - GFF2084 0.74 +0.5 132,670 - GFF2084 0.74 -0.2 133,367 + GFF2085 0.63 -0.9 133,367 + GFF2085 0.63 -1.2 133,367 + GFF2085 0.63 +0.1 133,466 + GFF2085 0.76 -0.7 133,466 + GFF2085 0.76 -0.3 133,467 - GFF2085 0.76 -0.3 133,891 + GFF2086 0.57 -0.0 133,891 + GFF2086 0.57 -0.6 133,892 - GFF2086 0.57 +0.9
Or see this region's nucleotide sequence