Strain Fitness in Variovorax sp. SCN45 around GFF2080

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2079 and GFF2080 are separated by 22 nucleotidesGFF2080 and GFF2081 are separated by 19 nucleotides GFF2079 - BUG/TctC family periplasmic protein, at 126,235 to 127,227 GFF2079 GFF2080 - Protein acetyltransferase, at 127,250 to 129,361 GFF2080 GFF2081 - no description, at 129,381 to 130,445 GFF2081 Position (kb) 127 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 126.296 kb on + strandat 126.297 kb on - strandat 126.297 kb on - strandat 126.297 kb on - strandat 126.297 kb on - strandat 126.297 kb on - strandat 126.470 kb on + strand, within GFF2079at 126.470 kb on + strand, within GFF2079at 126.470 kb on + strand, within GFF2079at 126.470 kb on + strand, within GFF2079at 126.471 kb on - strand, within GFF2079at 126.471 kb on - strand, within GFF2079at 126.471 kb on - strand, within GFF2079at 126.471 kb on - strand, within GFF2079at 126.485 kb on + strand, within GFF2079at 126.578 kb on + strand, within GFF2079at 126.578 kb on + strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.579 kb on - strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.662 kb on + strand, within GFF2079at 126.663 kb on - strand, within GFF2079at 126.663 kb on - strand, within GFF2079at 126.690 kb on - strand, within GFF2079at 126.704 kb on + strand, within GFF2079at 126.704 kb on + strand, within GFF2079at 126.704 kb on + strand, within GFF2079at 126.704 kb on + strand, within GFF2079at 126.705 kb on - strand, within GFF2079at 126.705 kb on - strand, within GFF2079at 126.705 kb on - strand, within GFF2079at 126.755 kb on + strand, within GFF2079at 126.755 kb on + strand, within GFF2079at 126.755 kb on + strand, within GFF2079at 126.756 kb on - strand, within GFF2079at 126.756 kb on - strand, within GFF2079at 126.823 kb on + strand, within GFF2079at 126.823 kb on + strand, within GFF2079at 126.823 kb on + strand, within GFF2079at 126.824 kb on - strand, within GFF2079at 126.824 kb on - strand, within GFF2079at 126.824 kb on - strand, within GFF2079at 126.902 kb on + strand, within GFF2079at 126.903 kb on - strand, within GFF2079at 126.903 kb on - strand, within GFF2079at 126.903 kb on - strand, within GFF2079at 126.903 kb on - strand, within GFF2079at 126.953 kb on + strand, within GFF2079at 126.954 kb on - strand, within GFF2079at 126.981 kb on - strand, within GFF2079at 127.027 kb on + strand, within GFF2079at 128.109 kb on + strand, within GFF2080at 128.351 kb on + strand, within GFF2080at 128.351 kb on + strand, within GFF2080at 128.351 kb on + strand, within GFF2080at 128.352 kb on - strand, within GFF2080at 128.352 kb on - strand, within GFF2080at 128.352 kb on - strand, within GFF2080at 128.352 kb on - strand, within GFF2080at 128.352 kb on - strand, within GFF2080at 128.352 kb on - strand, within GFF2080at 128.511 kb on + strand, within GFF2080at 128.532 kb on + strand, within GFF2080at 128.532 kb on + strand, within GFF2080at 128.532 kb on + strand, within GFF2080at 128.533 kb on - strand, within GFF2080at 128.533 kb on - strand, within GFF2080at 128.533 kb on - strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.691 kb on + strand, within GFF2080at 128.692 kb on - strand, within GFF2080at 128.692 kb on - strand, within GFF2080at 128.820 kb on + strand, within GFF2080at 128.821 kb on - strand, within GFF2080at 128.821 kb on - strand, within GFF2080at 128.821 kb on - strand, within GFF2080at 128.826 kb on + strand, within GFF2080at 128.826 kb on + strand, within GFF2080at 128.827 kb on - strand, within GFF2080at 128.913 kb on + strand, within GFF2080at 128.913 kb on + strand, within GFF2080at 128.914 kb on - strand, within GFF2080at 129.246 kb on + strandat 129.529 kb on + strand, within GFF2081at 129.529 kb on + strand, within GFF2081at 129.529 kb on + strand, within GFF2081at 129.530 kb on - strand, within GFF2081at 129.530 kb on - strand, within GFF2081at 129.530 kb on - strand, within GFF2081at 129.532 kb on + strand, within GFF2081at 129.532 kb on + strand, within GFF2081at 129.533 kb on - strand, within GFF2081at 129.533 kb on - strand, within GFF2081at 129.533 kb on - strand, within GFF2081at 129.533 kb on - strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.631 kb on + strand, within GFF2081at 129.632 kb on - strand, within GFF2081at 129.632 kb on - strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.697 kb on + strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.698 kb on - strand, within GFF2081at 129.706 kb on + strand, within GFF2081at 129.706 kb on + strand, within GFF2081at 129.736 kb on + strand, within GFF2081at 129.757 kb on + strand, within GFF2081at 129.757 kb on + strand, within GFF2081at 129.758 kb on - strand, within GFF2081at 129.823 kb on + strand, within GFF2081at 129.824 kb on - strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.835 kb on + strand, within GFF2081at 129.836 kb on - strand, within GFF2081at 129.868 kb on + strand, within GFF2081at 129.869 kb on - strand, within GFF2081at 129.916 kb on + strand, within GFF2081at 130.061 kb on - strand, within GFF2081at 130.084 kb on + strand, within GFF2081at 130.084 kb on + strand, within GFF2081at 130.085 kb on - strand, within GFF2081at 130.085 kb on - strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.100 kb on - strand, within GFF2081at 130.100 kb on - strand, within GFF2081at 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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126,296 + -0.8
126,297 - -1.3
126,297 - -0.2
126,297 - -0.1
126,297 - -0.3
126,297 - -0.5
126,470 + GFF2079 0.24 -1.3
126,470 + GFF2079 0.24 -0.6
126,470 + GFF2079 0.24 +0.1
126,470 + GFF2079 0.24 +0.1
126,471 - GFF2079 0.24 -0.3
126,471 - GFF2079 0.24 +0.9
126,471 - GFF2079 0.24 +0.2
126,471 - GFF2079 0.24 -0.4
126,485 + GFF2079 0.25 +1.9
126,578 + GFF2079 0.35 -0.3
126,578 + GFF2079 0.35 -0.4
126,579 - GFF2079 0.35 +0.5
126,579 - GFF2079 0.35 +0.3
126,579 - GFF2079 0.35 +0.1
126,579 - GFF2079 0.35 -1.0
126,579 - GFF2079 0.35 -0.4
126,579 - GFF2079 0.35 +1.3
126,662 + GFF2079 0.43 -1.2
126,662 + GFF2079 0.43 +0.7
126,662 + GFF2079 0.43 -1.5
126,662 + GFF2079 0.43 +0.1
126,662 + GFF2079 0.43 +0.2
126,663 - GFF2079 0.43 -0.5
126,663 - GFF2079 0.43 -0.4
126,690 - GFF2079 0.46 +0.6
126,704 + GFF2079 0.47 -0.0
126,704 + GFF2079 0.47 -0.1
126,704 + GFF2079 0.47 -0.7
126,704 + GFF2079 0.47 -0.5
126,705 - GFF2079 0.47 -1.2
126,705 - GFF2079 0.47 -0.6
126,705 - GFF2079 0.47 -0.4
126,755 + GFF2079 0.52 -0.5
126,755 + GFF2079 0.52 -0.2
126,755 + GFF2079 0.52 -0.3
126,756 - GFF2079 0.52 +0.4
126,756 - GFF2079 0.52 -0.9
126,823 + GFF2079 0.59 +1.0
126,823 + GFF2079 0.59 +0.7
126,823 + GFF2079 0.59 -1.5
126,824 - GFF2079 0.59 +0.2
126,824 - GFF2079 0.59 -0.7
126,824 - GFF2079 0.59 -0.0
126,902 + GFF2079 0.67 -1.3
126,903 - GFF2079 0.67 +0.2
126,903 - GFF2079 0.67 -0.4
126,903 - GFF2079 0.67 +0.2
126,903 - GFF2079 0.67 +0.7
126,953 + GFF2079 0.72 +1.2
126,954 - GFF2079 0.72 -0.2
126,981 - GFF2079 0.75 -0.7
127,027 + GFF2079 0.80 -1.4
128,109 + GFF2080 0.41 +0.2
128,351 + GFF2080 0.52 +1.1
128,351 + GFF2080 0.52 -0.6
128,351 + GFF2080 0.52 +0.8
128,352 - GFF2080 0.52 -0.1
128,352 - GFF2080 0.52 +1.1
128,352 - GFF2080 0.52 -0.8
128,352 - GFF2080 0.52 -1.1
128,352 - GFF2080 0.52 -0.6
128,352 - GFF2080 0.52 -0.8
128,511 + GFF2080 0.60 -0.5
128,532 + GFF2080 0.61 +0.1
128,532 + GFF2080 0.61 +4.3
128,532 + GFF2080 0.61 +0.2
128,533 - GFF2080 0.61 -0.3
128,533 - GFF2080 0.61 +1.1
128,533 - GFF2080 0.61 -0.4
128,691 + GFF2080 0.68 -0.9
128,691 + GFF2080 0.68 -0.6
128,691 + GFF2080 0.68 +0.1
128,691 + GFF2080 0.68 -0.3
128,691 + GFF2080 0.68 -0.9
128,691 + GFF2080 0.68 -0.6
128,692 - GFF2080 0.68 +1.6
128,692 - GFF2080 0.68 -1.1
128,820 + GFF2080 0.74 -0.3
128,821 - GFF2080 0.74 -2.2
128,821 - GFF2080 0.74 -0.6
128,821 - GFF2080 0.74 +0.3
128,826 + GFF2080 0.75 +1.1
128,826 + GFF2080 0.75 +0.5
128,827 - GFF2080 0.75 +0.1
128,913 + GFF2080 0.79 -1.2
128,913 + GFF2080 0.79 +0.3
128,914 - GFF2080 0.79 +1.1
129,246 + -0.7
129,529 + GFF2081 0.14 +0.2
129,529 + GFF2081 0.14 -0.5
129,529 + GFF2081 0.14 +0.2
129,530 - GFF2081 0.14 -1.8
129,530 - GFF2081 0.14 -1.3
129,530 - GFF2081 0.14 +0.2
129,532 + GFF2081 0.14 +0.7
129,532 + GFF2081 0.14 -1.5
129,533 - GFF2081 0.14 -0.4
129,533 - GFF2081 0.14 -0.0
129,533 - GFF2081 0.14 -0.4
129,533 - GFF2081 0.14 -0.4
129,631 + GFF2081 0.23 +0.2
129,631 + GFF2081 0.23 -0.8
129,631 + GFF2081 0.23 -0.1
129,631 + GFF2081 0.23 -0.3
129,631 + GFF2081 0.23 +0.1
129,631 + GFF2081 0.23 -0.8
129,632 - GFF2081 0.24 +0.9
129,632 - GFF2081 0.24 -0.7
129,697 + GFF2081 0.30 -0.3
129,697 + GFF2081 0.30 -1.8
129,697 + GFF2081 0.30 +0.1
129,697 + GFF2081 0.30 -0.5
129,697 + GFF2081 0.30 +1.5
129,698 - GFF2081 0.30 +0.0
129,698 - GFF2081 0.30 +1.4
129,698 - GFF2081 0.30 -0.7
129,698 - GFF2081 0.30 +0.7
129,698 - GFF2081 0.30 +0.2
129,706 + GFF2081 0.31 -0.5
129,706 + GFF2081 0.31 -0.9
129,736 + GFF2081 0.33 -0.0
129,757 + GFF2081 0.35 -0.3
129,757 + GFF2081 0.35 -1.4
129,758 - GFF2081 0.35 +1.3
129,823 + GFF2081 0.42 -0.4
129,824 - GFF2081 0.42 -0.1
129,832 + GFF2081 0.42 +0.1
129,832 + GFF2081 0.42 -0.7
129,832 + GFF2081 0.42 -0.0
129,832 + GFF2081 0.42 -0.5
129,832 + GFF2081 0.42 +0.3
129,833 - GFF2081 0.42 +1.6
129,833 - GFF2081 0.42 +0.6
129,833 - GFF2081 0.42 -1.1
129,833 - GFF2081 0.42 +0.1
129,833 - GFF2081 0.42 -0.7
129,833 - GFF2081 0.42 -0.1
129,835 + GFF2081 0.43 -0.7
129,836 - GFF2081 0.43 -0.4
129,868 + GFF2081 0.46 +0.5
129,869 - GFF2081 0.46 +0.2
129,916 + GFF2081 0.50 +0.1
130,061 - GFF2081 0.64 +0.7
130,084 + GFF2081 0.66 -0.7
130,084 + GFF2081 0.66 -0.8
130,085 - GFF2081 0.66 +0.3
130,085 - GFF2081 0.66 -0.9
130,099 + GFF2081 0.67 -0.4
130,099 + GFF2081 0.67 -0.5
130,099 + GFF2081 0.67 +0.1
130,100 - GFF2081 0.68 -0.6
130,100 - GFF2081 0.68 -0.4
130,348 + +0.7
130,348 + -1.2
130,348 + +0.2
130,348 + -0.0
130,348 + +0.1
130,348 + -0.7
130,348 + -0.4
130,348 + +0.7
130,349 - +0.0
130,349 - -1.3
130,349 - -0.4
130,349 - +0.6
130,349 - -0.8

Or see this region's nucleotide sequence