Strain Fitness in Variovorax sp. SCN45 around GFF2065

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
112,145	+		GFF2064	0.36	-0.7
112,145	+		GFF2064	0.36	-0.6
112,145	+		GFF2064	0.36	+0.9
112,145	+		GFF2064	0.36	-0.3
112,145	+		GFF2064	0.36	-0.2
112,145	+		GFF2064	0.36	-1.9
112,145	+		GFF2064	0.36	-0.2
112,145	+		GFF2064	0.36	+1.4
112,145	+		GFF2064	0.36	-1.3
112,145	+		GFF2064	0.36	-0.9
112,145	+		GFF2064	0.36	-0.7
112,145	+		GFF2064	0.36	-1.4
112,146	-		GFF2064	0.36	-0.7
112,146	-		GFF2064	0.36	-2.3
112,146	-		GFF2064	0.36	-1.3
112,146	-		GFF2064	0.36	+0.7
112,146	-		GFF2064	0.36	-0.4
112,146	-		GFF2064	0.36	-0.1
112,146	-		GFF2064	0.36	-1.3
112,146	-		GFF2064	0.36	-0.0
112,146	-		GFF2064	0.36	-0.4
112,146	-		GFF2064	0.36	-0.1
112,146	-		GFF2064	0.36	-0.5
112,523	+		GFF2064	0.70	+0.8
112,524	-		GFF2064	0.70	-0.9
112,524	-		GFF2064	0.70	+0.0
112,524	-		GFF2064	0.70	-0.0
112,643	+		GFF2064	0.81	-0.0
112,643	+		GFF2064	0.81	+0.2
112,643	+		GFF2064	0.81	-0.3
112,643	+		GFF2064	0.81	+0.3
112,643	+		GFF2064	0.81	-0.3
112,643	+		GFF2064	0.81	+0.2
112,643	+		GFF2064	0.81	-0.3
112,644	-		GFF2064	0.81	-0.4
112,644	-		GFF2064	0.81	-0.1
112,644	-		GFF2064	0.81	-0.1
112,644	-		GFF2064	0.81	-1.3
112,644	-		GFF2064	0.81	-0.4
112,644	-		GFF2064	0.81	+0.5
112,757	+				+0.4
112,757	+				-0.7
112,757	+				-0.3
113,042	+		GFF2065	0.10	+0.1
113,042	+		GFF2065	0.10	-0.7
113,042	+		GFF2065	0.10	+0.1
113,042	+		GFF2065	0.10	+0.3
113,043	-		GFF2065	0.10	+0.4
113,043	-		GFF2065	0.10	-0.4
113,043	-		GFF2065	0.10	-0.3
113,174	+		GFF2065	0.20	+0.7
113,174	+		GFF2065	0.20	+0.1
113,174	+		GFF2065	0.20	+1.5
113,174	+		GFF2065	0.20	+0.1
113,175	-		GFF2065	0.20	+0.9
113,175	-		GFF2065	0.20	-0.7
113,175	-		GFF2065	0.20	-0.4
113,297	+		GFF2065	0.29	-0.8
113,298	-		GFF2065	0.29	-0.4
113,396	+		GFF2065	0.37	+1.1
113,396	+		GFF2065	0.37	-0.5
113,396	+		GFF2065	0.37	-0.8
113,396	+		GFF2065	0.37	-0.4
113,397	-		GFF2065	0.37	-0.5
113,397	-		GFF2065	0.37	-0.3
113,397	-		GFF2065	0.37	+0.1
113,397	-		GFF2065	0.37	+0.3
113,397	-		GFF2065	0.37	+0.5
113,429	+		GFF2065	0.39	-0.9
113,429	+		GFF2065	0.39	-0.1
113,429	+		GFF2065	0.39	+0.9
113,430	-		GFF2065	0.39	-0.0
113,430	-		GFF2065	0.39	-0.7
113,430	-		GFF2065	0.39	-0.7
113,430	-		GFF2065	0.39	-0.3
113,432	+		GFF2065	0.39	+0.5
113,432	+		GFF2065	0.39	+0.8
113,432	+		GFF2065	0.39	-0.1
113,432	+		GFF2065	0.39	-0.2
113,432	+		GFF2065	0.39	-0.2
113,432	+		GFF2065	0.39	+0.4
113,432	+		GFF2065	0.39	+0.8
113,432	+		GFF2065	0.39	-0.1
113,432	+		GFF2065	0.39	-1.1
113,432	+		GFF2065	0.39	+0.0
113,432	+		GFF2065	0.39	-0.0
113,432	+		GFF2065	0.39	+0.0
113,432	+		GFF2065	0.39	+0.8
113,432	+		GFF2065	0.39	+0.3
113,432	+		GFF2065	0.39	+0.4
113,432	+		GFF2065	0.39	-0.7
113,433	-		GFF2065	0.39	-0.0
113,433	-		GFF2065	0.39	-0.4
113,433	-		GFF2065	0.39	+0.2
113,433	-		GFF2065	0.39	+0.0
113,433	-		GFF2065	0.39	+0.4
113,433	-		GFF2065	0.39	+0.1
113,433	-		GFF2065	0.39	+0.0
113,433	-		GFF2065	0.39	+0.7
113,433	-		GFF2065	0.39	-0.1
113,433	-		GFF2065	0.39	+0.1
113,433	-		GFF2065	0.39	+0.0
113,433	-		GFF2065	0.39	-0.7
113,433	-		GFF2065	0.39	-0.3
113,433	-		GFF2065	0.39	-1.0
113,433	-		GFF2065	0.39	-2.0
113,433	-		GFF2065	0.39	+0.3
113,433	-		GFF2065	0.39	-0.6
113,433	-		GFF2065	0.39	+0.2
113,433	-		GFF2065	0.39	+1.9
113,433	-		GFF2065	0.39	+0.3
113,433	-		GFF2065	0.39	-0.2
113,433	-		GFF2065	0.39	-0.1
113,561	+		GFF2065	0.49	-0.2
113,561	+		GFF2065	0.49	-1.3
113,561	+		GFF2065	0.49	+0.5
113,561	+		GFF2065	0.49	-1.4
113,561	+		GFF2065	0.49	-0.2
113,562	-		GFF2065	0.49	-3.1
113,562	-		GFF2065	0.49	-0.7
113,562	-		GFF2065	0.49	-1.5
113,562	-		GFF2065	0.49	-0.3
113,562	-		GFF2065	0.49	-0.2
113,562	-		GFF2065	0.49	+0.5
113,562	-		GFF2065	0.49	-0.8
113,562	-		GFF2065	0.49	-0.6
113,562	-		GFF2065	0.49	+1.9
113,562	-		GFF2065	0.49	-0.7
113,562	-		GFF2065	0.49	+0.6
113,562	-		GFF2065	0.49	-0.4
113,562	-		GFF2065	0.49	+0.2
113,562	-		GFF2065	0.49	+0.1
113,688	+		GFF2065	0.58	+0.3
113,688	+		GFF2065	0.58	+0.1
113,688	+		GFF2065	0.58	+0.6
113,688	+		GFF2065	0.58	+1.9
113,688	+		GFF2065	0.58	-0.3
113,688	+		GFF2065	0.58	-0.5
113,688	+		GFF2065	0.58	+1.0
113,689	-		GFF2065	0.58	+1.1
113,689	-		GFF2065	0.58	-0.4
113,689	-		GFF2065	0.58	-0.4
113,689	-		GFF2065	0.58	+1.3
113,689	-		GFF2065	0.58	-0.6
113,689	-		GFF2065	0.58	+0.8
113,689	-		GFF2065	0.58	+0.7
113,689	-		GFF2065	0.58	-0.2
113,780	+		GFF2065	0.65	-0.6
113,780	+		GFF2065	0.65	+0.1
113,780	+		GFF2065	0.65	+1.1
113,780	+		GFF2065	0.65	+0.3
113,780	+		GFF2065	0.65	+0.7
113,780	+		GFF2065	0.65	+0.8
113,780	+		GFF2065	0.65	+1.2
113,780	+		GFF2065	0.65	+0.3
113,781	-		GFF2065	0.65	-0.9
113,781	-		GFF2065	0.65	-0.3
113,781	-		GFF2065	0.65	-0.0
113,781	-		GFF2065	0.65	-0.5
113,781	-		GFF2065	0.65	-0.9
113,781	-		GFF2065	0.65	-0.6
114,182	+				+0.2
114,182	+				+0.2
114,182	+				-0.1
114,183	-				-0.1
114,183	-				-0.3
114,183	-				-0.1
114,183	-				+0.2
114,183	-				-0.1
114,183	-				+2.7
114,183	-				-0.4
114,183	-				+0.1
114,183	-				+0.3
114,195	+				-0.2
114,195	+				-0.2
114,195	+				-0.5
114,195	+				-0.4
114,195	+				-0.7
114,195	+				-0.4
114,195	+				+0.2
114,195	+				-2.2
114,195	+				-0.3
114,195	+				-0.0
114,195	+				-0.2
114,195	+				-0.3
114,195	+				-2.9
114,195	+				+0.9
114,195	+				+0.3
114,195	+				+0.2
114,195	+				+0.9
114,195	+				+0.5
114,195	+				+0.0
114,196	-				+0.3
114,196	-				-0.2
114,196	-				+0.3
114,196	-				-0.3
114,196	-				-0.1
114,196	-				+1.2
114,196	-				-0.9
114,196	-				+0.1
114,196	-				+0.5
114,196	-				-0.4
114,196	-				-1.9
114,196	-				+0.0
114,196	-				-0.9
114,196	-				-0.2
114,196	-				+0.9
114,196	-				-0.4
114,196	-				-0.1
114,196	-				-0.2
114,196	-				+0.6
114,196	-				+0.1
114,196	-				-0.6
114,196	-				-0.8
114,196	-				-0.1
114,196	-				-0.4
114,196	-				-0.1
114,196	-				+0.1
114,196	-				-0.1
114,196	-				-1.1
114,196	-				-1.7
114,196	-				-0.1
114,196	-				-0.4
114,196	-				-0.3
114,196	-				-0.7
114,196	-				-0.1
114,196	-				-0.1
114,196	-				-0.4
114,196	-				-0.8
114,196	-				+0.4
114,196	-				-1.3
114,196	-				-0.5
114,196	-				-0.0
114,196	-				-0.5
114,196	-				+0.2
114,196	-				-1.4
114,197	+				+1.0
114,197	+				-1.1
114,197	+				-0.5
114,197	+				+0.6
114,197	+				-0.2
114,197	+				-0.9
114,197	+				-0.4
114,197	+				+1.5
114,197	+				+0.4
114,197	+				-0.3
114,198	-				-0.1
114,198	-				-0.1
114,198	-				+0.6
114,198	-				+0.2
114,198	-				+0.2
114,198	-				-0.6
114,198	-				-0.1
114,198	-				-0.7
114,198	-				-0.3
114,198	-				-0.3
114,198	-				-1.2
114,198	-				-0.3
114,198	-				-0.6
114,198	-				+1.9
114,297	+				-0.7
114,297	+				+0.8
114,297	+				-1.4
114,298	-				-0.3
114,341	+				-1.1
114,341	+				+0.6
114,343	+				+0.1
114,372	+				-0.2
114,372	+				+0.1
114,372	+				-0.6
114,372	+				-0.9
114,372	+				+0.0
114,372	+				-0.3
114,372	+				-0.4
114,372	+				-0.5
114,372	+				-0.7
114,372	+				+0.1
114,372	+				+0.1
114,372	+				-0.0
114,372	+				-0.4
114,372	+				-0.1
114,373	-				-0.2
114,373	-				+0.5
114,373	-				+0.1
114,373	-				-0.3
114,373	-				+0.7
114,373	-				+0.0
114,373	-				+1.1
114,373	-				-1.5
114,373	-				-0.1
114,374	+				+0.2
114,374	+				-0.9
114,374	+				-2.2
114,374	+				-1.4
114,375	-				-0.1
114,375	-				-0.3
114,375	-				-0.2
114,375	-				-1.8
114,375	-				-0.5
114,375	-				-0.2
114,411	+				-0.9
114,427	+				-0.7
114,427	+				-0.9
114,427	+				-1.1
114,428	-				-0.4