Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2047 and GFF2048 overlap by 4 nucleotides GFF2048 and GFF2049 are separated by 32 nucleotides GFF2049 and GFF2050 are separated by 26 nucleotides GFF2050 and GFF2051 are separated by 156 nucleotides
GFF2047 - Polyhydroxyalkanoic acid synthase, at 95,473 to 96,546
GFF2047
GFF2048 - hypothetical protein, at 96,543 to 96,950
GFF2048
GFF2049 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 96,983 to 97,903
GFF2049
GFF2050 - hypothetical protein, at 97,930 to 98,430
GFF2050
GFF2051 - FIG00463476: hypothetical protein, at 98,587 to 99,234
GFF2051
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.078 kb on - strand, within GFF2047 at 96.185 kb on + strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.186 kb on - strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.242 kb on + strand, within GFF2047 at 96.243 kb on - strand, within GFF2047 at 96.251 kb on + strand, within GFF2047 at 96.251 kb on + strand, within GFF2047 at 96.252 kb on - strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.269 kb on + strand, within GFF2047 at 96.270 kb on - strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.308 kb on + strand, within GFF2047 at 96.309 kb on - strand, within GFF2047 at 96.309 kb on - strand, within GFF2047 at 96.354 kb on - strand, within GFF2047 at 96.354 kb on - strand, within GFF2047 at 96.377 kb on + strand, within GFF2047 at 96.378 kb on - strand, within GFF2047 at 96.383 kb on + strand, within GFF2047 at 96.383 kb on + strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 96.384 kb on - strand, within GFF2047 at 97.362 kb on + strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.363 kb on - strand, within GFF2049 at 97.605 kb on + strand, within GFF2049 at 97.606 kb on - strand, within GFF2049 at 97.606 kb on - strand, within GFF2049 at 97.606 kb on - strand, within GFF2049 at 97.606 kb on - strand, within GFF2049 at 97.931 kb on + strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.931 kb on + strand at 97.932 kb on - strand at 98.207 kb on + strand, within GFF2050 at 98.207 kb on + strand, within GFF2050 at 98.208 kb on - strand, within GFF2050 at 98.505 kb on + strand at 98.506 kb on - strand at 98.578 kb on - strand at 98.578 kb on - strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.589 kb on - strand at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.768 kb on + strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051 at 98.769 kb on - strand, within GFF2051
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 96,078 - GFF2047 0.56 -1.3 96,185 + GFF2047 0.66 -0.0 96,186 - GFF2047 0.66 -0.3 96,186 - GFF2047 0.66 +0.2 96,186 - GFF2047 0.66 -0.4 96,242 + GFF2047 0.72 -0.3 96,242 + GFF2047 0.72 -0.5 96,242 + GFF2047 0.72 -1.2 96,242 + GFF2047 0.72 +0.9 96,242 + GFF2047 0.72 +1.2 96,242 + GFF2047 0.72 -0.4 96,243 - GFF2047 0.72 -0.6 96,251 + GFF2047 0.72 -0.3 96,251 + GFF2047 0.72 +0.0 96,252 - GFF2047 0.73 -0.6 96,269 + GFF2047 0.74 +0.3 96,269 + GFF2047 0.74 +0.0 96,269 + GFF2047 0.74 -0.8 96,270 - GFF2047 0.74 +2.5 96,308 + GFF2047 0.78 +0.7 96,308 + GFF2047 0.78 -0.1 96,308 + GFF2047 0.78 -0.4 96,309 - GFF2047 0.78 -0.2 96,309 - GFF2047 0.78 +0.0 96,354 - GFF2047 0.82 +0.5 96,354 - GFF2047 0.82 +0.2 96,377 + GFF2047 0.84 -0.4 96,378 - GFF2047 0.84 -0.1 96,383 + GFF2047 0.85 +1.9 96,383 + GFF2047 0.85 -0.2 96,384 - GFF2047 0.85 -0.4 96,384 - GFF2047 0.85 +1.3 96,384 - GFF2047 0.85 -1.9 96,384 - GFF2047 0.85 +1.5 97,362 + GFF2049 0.41 +0.7 97,363 - GFF2049 0.41 +1.6 97,363 - GFF2049 0.41 +0.2 97,363 - GFF2049 0.41 -1.0 97,363 - GFF2049 0.41 +0.0 97,605 + GFF2049 0.68 +1.3 97,606 - GFF2049 0.68 -0.1 97,606 - GFF2049 0.68 -1.1 97,606 - GFF2049 0.68 +0.3 97,606 - GFF2049 0.68 +0.2 97,931 + -0.1 97,931 + +1.3 97,931 + -1.2 97,931 + +0.3 97,931 + -1.0 97,931 + -1.2 97,932 - -0.1 98,207 + GFF2050 0.55 -1.0 98,207 + GFF2050 0.55 +1.9 98,208 - GFF2050 0.55 +0.3 98,505 + +0.1 98,506 - +0.7 98,578 - -0.3 98,578 - -0.3 98,588 + -0.1 98,588 + -0.9 98,588 + +0.0 98,588 + -1.8 98,588 + +1.6 98,588 + -0.1 98,588 + -0.4 98,588 + -0.3 98,589 - -0.8 98,589 - -0.3 98,589 - -0.3 98,589 - -0.2 98,589 - -0.2 98,589 - -0.9 98,589 - -0.9 98,589 - -0.4 98,768 + GFF2051 0.28 -0.4 98,768 + GFF2051 0.28 -1.3 98,768 + GFF2051 0.28 -0.2 98,768 + GFF2051 0.28 -0.6 98,768 + GFF2051 0.28 -0.4 98,768 + GFF2051 0.28 -0.3 98,769 - GFF2051 0.28 -0.4 98,769 - GFF2051 0.28 -0.3 98,769 - GFF2051 0.28 -0.7 98,769 - GFF2051 0.28 +0.3 98,769 - GFF2051 0.28 -0.2 98,769 - GFF2051 0.28 -0.7 98,769 - GFF2051 0.28 -0.2
Or see this region's nucleotide sequence