Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2021 and GFF2022 overlap by 4 nucleotides GFF2022 and GFF2023 are separated by 137 nucleotides
GFF2021 - FIG00538369: hypothetical protein, at 64,703 to 65,926
GFF2021
GFF2022 - Acyl-CoA dehydrogenase, at 65,923 to 67,092
GFF2022
GFF2023 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 67,230 to 68,150
GFF2023
Position (kb) 65
66
67
68 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 64.988 kb on + strand, within GFF2021 at 64.989 kb on - strand, within GFF2021 at 64.989 kb on - strand, within GFF2021 at 65.031 kb on - strand, within GFF2021 at 65.066 kb on + strand, within GFF2021 at 65.066 kb on + strand, within GFF2021 at 65.067 kb on - strand, within GFF2021 at 65.085 kb on - strand, within GFF2021 at 65.102 kb on + strand, within GFF2021 at 65.102 kb on + strand, within GFF2021 at 65.420 kb on + strand, within GFF2021 at 65.421 kb on - strand, within GFF2021 at 65.456 kb on + strand, within GFF2021 at 65.457 kb on - strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.567 kb on + strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.568 kb on - strand, within GFF2021 at 65.708 kb on + strand, within GFF2021 at 66.001 kb on + strand at 66.002 kb on - strand at 66.493 kb on + strand, within GFF2022 at 66.493 kb on + strand, within GFF2022 at 66.494 kb on - strand, within GFF2022 at 66.494 kb on - strand, within GFF2022 at 66.494 kb on - strand, within GFF2022 at 66.637 kb on + strand, within GFF2022 at 66.637 kb on + strand, within GFF2022 at 66.637 kb on + strand, within GFF2022 at 66.638 kb on - strand, within GFF2022 at 66.638 kb on - strand, within GFF2022 at 66.638 kb on - strand, within GFF2022 at 66.638 kb on - strand, within GFF2022 at 66.727 kb on + strand, within GFF2022 at 66.728 kb on - strand, within GFF2022 at 66.728 kb on - strand, within GFF2022 at 66.728 kb on - strand, within GFF2022 at 66.853 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.899 kb on - strand, within GFF2022 at 66.899 kb on - strand, within GFF2022 at 66.964 kb on + strand, within GFF2022 at 66.964 kb on + strand, within GFF2022 at 66.965 kb on - strand, within GFF2022 at 66.976 kb on + strand at 66.976 kb on + strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.007 kb on - strand at 67.007 kb on - strand at 67.007 kb on - strand at 67.007 kb on - strand at 67.007 kb on - strand at 67.010 kb on + strand at 67.010 kb on + strand at 67.010 kb on + strand at 67.087 kb on + strand at 67.087 kb on + strand at 67.088 kb on - strand at 67.137 kb on + strand at 67.137 kb on + strand at 67.138 kb on - strand at 67.138 kb on - strand at 67.138 kb on - strand at 67.155 kb on + strand at 67.155 kb on + strand at 67.156 kb on - strand at 67.156 kb on - strand at 67.458 kb on + strand, within GFF2023 at 67.458 kb on + strand, within GFF2023 at 67.459 kb on - strand, within GFF2023 at 67.723 kb on - strand, within GFF2023 at 67.875 kb on + strand, within GFF2023 at 67.875 kb on + strand, within GFF2023 at 67.876 kb on - strand, within GFF2023 at 67.966 kb on - strand, within GFF2023 at 68.010 kb on + strand, within GFF2023 at 68.010 kb on + strand, within GFF2023 at 68.010 kb on + strand, within GFF2023 at 68.010 kb on + strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.076 kb on + strand at 68.076 kb on + strand at 68.076 kb on + strand at 68.076 kb on + strand at 68.076 kb on + strand at 68.076 kb on + strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 64,988 + GFF2021 0.23 -0.2 64,989 - GFF2021 0.23 -0.7 64,989 - GFF2021 0.23 -0.3 65,031 - GFF2021 0.27 -1.5 65,066 + GFF2021 0.30 +0.2 65,066 + GFF2021 0.30 -0.8 65,067 - GFF2021 0.30 +0.6 65,085 - GFF2021 0.31 -1.1 65,102 + GFF2021 0.33 +0.1 65,102 + GFF2021 0.33 -0.2 65,420 + GFF2021 0.59 +0.1 65,421 - GFF2021 0.59 -0.8 65,456 + GFF2021 0.62 -0.3 65,457 - GFF2021 0.62 +1.4 65,567 + GFF2021 0.71 +0.7 65,567 + GFF2021 0.71 -0.5 65,567 + GFF2021 0.71 -0.6 65,567 + GFF2021 0.71 -0.1 65,568 - GFF2021 0.71 +1.2 65,568 - GFF2021 0.71 -1.2 65,568 - GFF2021 0.71 +0.0 65,568 - GFF2021 0.71 -0.2 65,708 + GFF2021 0.82 +0.1 66,001 + -0.4 66,002 - -0.1 66,493 + GFF2022 0.49 +3.8 66,493 + GFF2022 0.49 +0.2 66,494 - GFF2022 0.49 +0.0 66,494 - GFF2022 0.49 -0.4 66,494 - GFF2022 0.49 -0.2 66,637 + GFF2022 0.61 -0.3 66,637 + GFF2022 0.61 -0.3 66,637 + GFF2022 0.61 +1.1 66,638 - GFF2022 0.61 +1.0 66,638 - GFF2022 0.61 -0.1 66,638 - GFF2022 0.61 -0.5 66,638 - GFF2022 0.61 +0.7 66,727 + GFF2022 0.69 +0.5 66,728 - GFF2022 0.69 +0.9 66,728 - GFF2022 0.69 -0.2 66,728 - GFF2022 0.69 -0.3 66,853 + GFF2022 0.79 +0.9 66,898 + GFF2022 0.83 +0.3 66,898 + GFF2022 0.83 -0.7 66,898 + GFF2022 0.83 +0.4 66,898 + GFF2022 0.83 +0.2 66,898 + GFF2022 0.83 -0.2 66,899 - GFF2022 0.83 +0.2 66,899 - GFF2022 0.83 +0.3 66,964 + GFF2022 0.89 -0.3 66,964 + GFF2022 0.89 -0.4 66,965 - GFF2022 0.89 -1.3 66,976 + -0.0 66,976 + -0.0 66,977 - -0.3 66,977 - +0.1 66,977 - -0.2 66,977 - +1.5 66,977 - -1.5 66,977 - +2.7 66,977 - +0.3 66,977 - -0.9 67,006 + -0.6 67,006 + +0.2 67,006 + -2.2 67,006 + -0.1 67,006 + +0.2 67,006 + -0.3 67,006 + +0.3 67,006 + -0.9 67,006 + +0.6 67,006 + -0.4 67,006 + +0.9 67,007 - -0.3 67,007 - +0.3 67,007 - +1.1 67,007 - -0.6 67,007 - +0.5 67,010 + -0.1 67,010 + +0.5 67,010 + -0.7 67,087 + -0.4 67,087 + +0.2 67,088 - -1.9 67,137 + -0.0 67,137 + +0.8 67,138 - -0.3 67,138 - -0.2 67,138 - +1.9 67,155 + +0.6 67,155 + +4.0 67,156 - -0.8 67,156 - -0.2 67,458 + GFF2023 0.25 +0.6 67,458 + GFF2023 0.25 -1.1 67,459 - GFF2023 0.25 -1.1 67,723 - GFF2023 0.54 +0.1 67,875 + GFF2023 0.70 -0.8 67,875 + GFF2023 0.70 -1.3 67,876 - GFF2023 0.70 -0.8 67,966 - GFF2023 0.80 -0.9 68,010 + GFF2023 0.85 -0.1 68,010 + GFF2023 0.85 -0.2 68,010 + GFF2023 0.85 -0.2 68,010 + GFF2023 0.85 +0.2 68,011 - GFF2023 0.85 -0.3 68,011 - GFF2023 0.85 -0.8 68,011 - GFF2023 0.85 +0.1 68,011 - GFF2023 0.85 +1.2 68,011 - GFF2023 0.85 +0.5 68,011 - GFF2023 0.85 -0.4 68,076 + -0.9 68,076 + +0.4 68,076 + -1.1 68,076 + -0.3 68,076 + +0.3 68,076 + -0.2 68,077 - +0.6 68,077 - -0.3 68,077 - +0.9 68,077 - -0.9 68,077 - -1.4 68,077 - +0.0 68,077 - -0.5
Or see this region's nucleotide sequence