Strain Fitness in Variovorax sp. SCN45 around GFF1993

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1992 and GFF1993 are separated by 59 nucleotidesGFF1993 and GFF1994 are separated by 86 nucleotides GFF1992 - Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-), at 33,270 to 35,090 GFF1992 GFF1993 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 35,150 to 36,334 GFF1993 GFF1994 - Glutamate carboxypeptidase (EC 3.4.17.11), at 36,421 to 37,671 GFF1994 Position (kb) 35 36 37Strain fitness (log2 ratio) -1 0 1at 34.182 kb on + strand, within GFF1992at 34.209 kb on + strand, within GFF1992at 34.314 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.359 kb on + strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.360 kb on - strand, within GFF1992at 34.548 kb on + strand, within GFF1992at 34.548 kb on + strand, within GFF1992at 34.549 kb on - strand, within GFF1992at 34.581 kb on + strand, within GFF1992at 34.581 kb on + strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.582 kb on - strand, within GFF1992at 34.674 kb on + strand, within GFF1992at 34.674 kb on + strand, within GFF1992at 34.675 kb on - strand, within GFF1992at 34.675 kb on - strand, within GFF1992at 34.773 kb on + strand, within GFF1992at 34.773 kb on + strand, within GFF1992at 34.774 kb on - strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.794 kb on + strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.795 kb on - strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.869 kb on + strand, within GFF1992at 34.870 kb on - strand, within GFF1992at 35.363 kb on + strand, within GFF1993at 35.363 kb on + strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.364 kb on - strand, within GFF1993at 35.519 kb on + strand, within GFF1993at 35.520 kb on - strand, within GFF1993at 35.606 kb on + strand, within GFF1993at 35.607 kb on - strand, within GFF1993at 35.657 kb on + strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 35.658 kb on - strand, within GFF1993at 36.330 kb on + strandat 36.330 kb on + strandat 36.330 kb on + strandat 36.330 kb on + strandat 36.330 kb on + strandat 36.330 kb on + strandat 36.330 kb on + strandat 36.331 kb on - strandat 36.331 kb on - strandat 36.331 kb on - strandat 36.331 kb on - strandat 36.332 kb on + strandat 36.332 kb on + strandat 36.332 kb on + strandat 36.333 kb on - strandat 36.333 kb on - strandat 36.333 kb on - strandat 36.333 kb on - strandat 36.333 kb on - strandat 36.333 kb on - strandat 36.333 kb on - strandat 36.389 kb on + strandat 36.397 kb on + strandat 36.397 kb on + strandat 36.398 kb on - strandat 36.405 kb on + strandat 36.629 kb on - strand, within GFF1994at 36.629 kb on - strand, within GFF1994at 36.772 kb on + strand, within GFF1994at 36.772 kb on + strand, within GFF1994at 36.772 kb on + strand, within GFF1994at 36.772 kb on + strand, within GFF1994at 36.826 kb on + strand, within GFF1994at 36.898 kb on + strand, within GFF1994at 36.898 kb on + strand, within GFF1994at 36.899 kb on - strand, within GFF1994at 36.899 kb on - strand, within GFF1994at 36.914 kb on - strand, within GFF1994at 37.006 kb on + strand, within GFF1994at 37.007 kb on - strand, within GFF1994at 37.007 kb on - strand, within GFF1994at 37.289 kb on - strand, within GFF1994

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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34,182 + GFF1992 0.50 +1.2
34,209 + GFF1992 0.52 +0.0
34,314 + GFF1992 0.57 +0.5
34,359 + GFF1992 0.60 -1.3
34,359 + GFF1992 0.60 +0.5
34,359 + GFF1992 0.60 +1.1
34,359 + GFF1992 0.60 +0.7
34,359 + GFF1992 0.60 -0.1
34,359 + GFF1992 0.60 -0.4
34,359 + GFF1992 0.60 -0.8
34,359 + GFF1992 0.60 -1.0
34,359 + GFF1992 0.60 -0.7
34,359 + GFF1992 0.60 -1.3
34,359 + GFF1992 0.60 -1.0
34,359 + GFF1992 0.60 +0.4
34,360 - GFF1992 0.60 +0.6
34,360 - GFF1992 0.60 +0.0
34,360 - GFF1992 0.60 +0.7
34,360 - GFF1992 0.60 -0.9
34,360 - GFF1992 0.60 -0.1
34,360 - GFF1992 0.60 +0.3
34,360 - GFF1992 0.60 +0.9
34,360 - GFF1992 0.60 -0.1
34,360 - GFF1992 0.60 +0.6
34,548 + GFF1992 0.70 +0.0
34,548 + GFF1992 0.70 -0.1
34,549 - GFF1992 0.70 -0.9
34,581 + GFF1992 0.72 -0.4
34,581 + GFF1992 0.72 +0.5
34,582 - GFF1992 0.72 +0.1
34,582 - GFF1992 0.72 -0.4
34,582 - GFF1992 0.72 -0.1
34,582 - GFF1992 0.72 +0.3
34,674 + GFF1992 0.77 -0.2
34,674 + GFF1992 0.77 -0.1
34,675 - GFF1992 0.77 +0.2
34,675 - GFF1992 0.77 -1.2
34,773 + GFF1992 0.83 -0.2
34,773 + GFF1992 0.83 +0.6
34,774 - GFF1992 0.83 +0.5
34,794 + GFF1992 0.84 -0.4
34,794 + GFF1992 0.84 -0.1
34,794 + GFF1992 0.84 -0.5
34,794 + GFF1992 0.84 -1.3
34,795 - GFF1992 0.84 +0.0
34,795 - GFF1992 0.84 -0.1
34,795 - GFF1992 0.84 +0.8
34,869 + GFF1992 0.88 +0.6
34,869 + GFF1992 0.88 -0.5
34,869 + GFF1992 0.88 +0.2
34,870 - GFF1992 0.88 -0.7
35,363 + GFF1993 0.18 +0.3
35,363 + GFF1993 0.18 +0.2
35,364 - GFF1993 0.18 +0.0
35,364 - GFF1993 0.18 -0.1
35,364 - GFF1993 0.18 -0.1
35,364 - GFF1993 0.18 -0.2
35,519 + GFF1993 0.31 -0.2
35,520 - GFF1993 0.31 +0.6
35,606 + GFF1993 0.38 +0.8
35,607 - GFF1993 0.39 -0.2
35,657 + GFF1993 0.43 +0.1
35,658 - GFF1993 0.43 -0.7
35,658 - GFF1993 0.43 -0.6
35,658 - GFF1993 0.43 +0.9
35,658 - GFF1993 0.43 -0.5
35,658 - GFF1993 0.43 +1.2
35,658 - GFF1993 0.43 -0.7
36,330 + -0.1
36,330 + -0.8
36,330 + +1.1
36,330 + +0.1
36,330 + -0.9
36,330 + +0.1
36,330 + -0.1
36,331 - -0.7
36,331 - -1.1
36,331 - -0.9
36,331 - -0.3
36,332 + -0.8
36,332 + -0.4
36,332 + -0.6
36,333 - -0.5
36,333 - -1.4
36,333 - +0.1
36,333 - -0.2
36,333 - +0.4
36,333 - +0.2
36,333 - -1.1
36,389 + -0.2
36,397 + -0.0
36,397 + +0.3
36,398 - +0.1
36,405 + -0.7
36,629 - GFF1994 0.17 +0.7
36,629 - GFF1994 0.17 -0.1
36,772 + GFF1994 0.28 +0.1
36,772 + GFF1994 0.28 +0.3
36,772 + GFF1994 0.28 +0.5
36,772 + GFF1994 0.28 -0.3
36,826 + GFF1994 0.32 +1.1
36,898 + GFF1994 0.38 -0.6
36,898 + GFF1994 0.38 -0.5
36,899 - GFF1994 0.38 -0.6
36,899 - GFF1994 0.38 -0.4
36,914 - GFF1994 0.39 -0.6
37,006 + GFF1994 0.47 -0.6
37,007 - GFF1994 0.47 -0.4
37,007 - GFF1994 0.47 -1.5
37,289 - GFF1994 0.69 -0.0

Or see this region's nucleotide sequence