Strain Fitness in Variovorax sp. SCN45 around GFF1954

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1952 and GFF1953 overlap by 4 nucleotidesGFF1953 and GFF1954 overlap by 4 nucleotidesGFF1954 and GFF1955 overlap by 4 nucleotides GFF1952 - Metallophosphoesterase, at 645,814 to 646,527 GFF1952 GFF1953 - hypothetical protein, at 646,524 to 647,171 GFF1953 GFF1954 - no description, at 647,168 to 648,433 GFF1954 GFF1955 - hypothetical protein, at 648,430 to 649,458 GFF1955 Position (kb) 647 648 649Strain fitness (log2 ratio) -2 -1 0 1 2at 646.249 kb on - strand, within GFF1952at 646.249 kb on - strand, within GFF1952at 646.414 kb on + strand, within GFF1952at 646.414 kb on + strand, within GFF1952at 646.414 kb on + strand, within GFF1952at 646.415 kb on - strand, within GFF1952at 646.415 kb on - strand, within GFF1952at 646.415 kb on - strand, within GFF1952at 646.415 kb on - strand, within GFF1952at 646.415 kb on - strand, within GFF1952at 646.520 kb on + strandat 646.520 kb on + strandat 646.536 kb on + strandat 646.536 kb on + strandat 646.536 kb on + strandat 646.536 kb on + strandat 646.536 kb on + strandat 646.536 kb on + strandat 646.537 kb on - strandat 646.568 kb on + strandat 646.622 kb on + strand, within GFF1953at 646.622 kb on + strand, within GFF1953at 646.622 kb on + strand, within GFF1953at 646.628 kb on + strand, within GFF1953at 646.628 kb on + strand, within GFF1953at 646.629 kb on - strand, within GFF1953at 646.705 kb on - strand, within GFF1953at 646.705 kb on - strand, within GFF1953at 646.711 kb on + strand, within GFF1953at 646.770 kb on + strand, within GFF1953at 646.771 kb on - strand, within GFF1953at 646.771 kb on - strand, within GFF1953at 646.854 kb on - strand, within GFF1953at 647.038 kb on + strand, within GFF1953at 647.099 kb on + strand, within GFF1953at 647.099 kb on + strand, within GFF1953at 647.099 kb on + strand, within GFF1953at 647.099 kb on + strand, within GFF1953at 647.100 kb on - strand, within GFF1953at 647.100 kb on - strand, within GFF1953at 647.100 kb on - strand, within GFF1953at 647.285 kb on + strandat 647.286 kb on - strandat 647.392 kb on - strand, within GFF1954at 647.488 kb on - strand, within GFF1954at 647.865 kb on + strand, within GFF1954at 647.890 kb on - strand, within GFF1954at 647.890 kb on - strand, within GFF1954at 647.955 kb on - strand, within GFF1954at 648.511 kb on + strandat 648.511 kb on + strandat 648.511 kb on + strandat 648.511 kb on + strandat 648.512 kb on - strandat 648.512 kb on - strandat 648.512 kb on - strandat 648.512 kb on - strandat 648.533 kb on + strand, within GFF1955at 648.562 kb on + strand, within GFF1955at 648.562 kb on + strand, within GFF1955at 648.562 kb on + strand, within GFF1955at 648.562 kb on + strand, within GFF1955at 648.562 kb on + strand, within GFF1955at 648.562 kb on + strand, within GFF1955at 648.602 kb on - strand, within GFF1955at 648.693 kb on + strand, within GFF1955at 648.694 kb on - strand, within GFF1955at 648.724 kb on + strand, within GFF1955at 648.724 kb on + strand, within GFF1955at 648.724 kb on + strand, within GFF1955at 648.724 kb on + strand, within GFF1955at 648.724 kb on + strand, within GFF1955at 648.725 kb on - strand, within GFF1955at 648.725 kb on - strand, within GFF1955at 648.725 kb on - strand, within GFF1955at 648.725 kb on - strand, within GFF1955at 648.726 kb on + strand, within GFF1955at 648.726 kb on + strand, within GFF1955at 648.726 kb on + strand, within GFF1955at 648.727 kb on - strand, within GFF1955at 648.727 kb on - strand, within GFF1955at 648.727 kb on - strand, within GFF1955at 648.727 kb on - strand, within GFF1955at 648.895 kb on + strand, within GFF1955at 648.895 kb on + strand, within GFF1955at 648.896 kb on - strand, within GFF1955at 648.896 kb on - strand, within GFF1955at 648.896 kb on - strand, within GFF1955at 648.896 kb on - strand, within GFF1955at 648.899 kb on + strand, within GFF1955at 648.899 kb on + strand, within GFF1955at 648.900 kb on - strand, within GFF1955at 648.900 kb on - strand, within GFF1955at 648.900 kb on - strand, within GFF1955at 649.009 kb on - strand, within GFF1955at 649.107 kb on - strand, within GFF1955at 649.274 kb on + strand, within GFF1955at 649.309 kb on + strand, within GFF1955at 649.365 kb on + strandat 649.365 kb on + strandat 649.365 kb on + strandat 649.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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646,249 - GFF1952 0.61 -0.2
646,249 - GFF1952 0.61 +0.7
646,414 + GFF1952 0.84 +1.3
646,414 + GFF1952 0.84 +0.5
646,414 + GFF1952 0.84 +0.8
646,415 - GFF1952 0.84 -0.4
646,415 - GFF1952 0.84 +1.4
646,415 - GFF1952 0.84 +0.4
646,415 - GFF1952 0.84 -1.3
646,415 - GFF1952 0.84 +1.7
646,520 + +0.1
646,520 + +0.1
646,536 + -0.2
646,536 + -0.2
646,536 + +1.4
646,536 + +1.0
646,536 + -1.4
646,536 + -0.6
646,537 - +1.5
646,568 + -0.7
646,622 + GFF1953 0.15 -0.1
646,622 + GFF1953 0.15 +0.4
646,622 + GFF1953 0.15 +1.1
646,628 + GFF1953 0.16 -0.0
646,628 + GFF1953 0.16 -0.8
646,629 - GFF1953 0.16 -0.2
646,705 - GFF1953 0.28 -1.9
646,705 - GFF1953 0.28 +0.0
646,711 + GFF1953 0.29 -1.4
646,770 + GFF1953 0.38 +0.1
646,771 - GFF1953 0.38 +0.3
646,771 - GFF1953 0.38 -0.6
646,854 - GFF1953 0.51 +0.7
647,038 + GFF1953 0.79 +0.4
647,099 + GFF1953 0.89 -0.3
647,099 + GFF1953 0.89 +2.0
647,099 + GFF1953 0.89 +1.0
647,099 + GFF1953 0.89 +0.1
647,100 - GFF1953 0.89 +0.4
647,100 - GFF1953 0.89 +0.9
647,100 - GFF1953 0.89 -0.9
647,285 + -1.4
647,286 - -0.9
647,392 - GFF1954 0.18 +1.7
647,488 - GFF1954 0.25 +0.1
647,865 + GFF1954 0.55 -0.9
647,890 - GFF1954 0.57 +0.6
647,890 - GFF1954 0.57 -0.1
647,955 - GFF1954 0.62 +1.1
648,511 + +0.0
648,511 + +0.4
648,511 + +1.7
648,511 + -0.3
648,512 - -0.3
648,512 - +2.7
648,512 - -0.7
648,512 - -0.5
648,533 + GFF1955 0.10 -0.3
648,562 + GFF1955 0.13 -0.7
648,562 + GFF1955 0.13 -1.1
648,562 + GFF1955 0.13 -0.1
648,562 + GFF1955 0.13 +1.1
648,562 + GFF1955 0.13 -0.4
648,562 + GFF1955 0.13 +0.6
648,602 - GFF1955 0.17 -0.5
648,693 + GFF1955 0.26 +0.3
648,694 - GFF1955 0.26 +0.4
648,724 + GFF1955 0.29 -0.1
648,724 + GFF1955 0.29 +0.9
648,724 + GFF1955 0.29 -0.7
648,724 + GFF1955 0.29 +0.1
648,724 + GFF1955 0.29 +0.7
648,725 - GFF1955 0.29 +1.4
648,725 - GFF1955 0.29 +0.3
648,725 - GFF1955 0.29 -0.1
648,725 - GFF1955 0.29 -0.6
648,726 + GFF1955 0.29 -0.4
648,726 + GFF1955 0.29 -0.1
648,726 + GFF1955 0.29 -0.3
648,727 - GFF1955 0.29 +0.5
648,727 - GFF1955 0.29 -0.4
648,727 - GFF1955 0.29 +1.7
648,727 - GFF1955 0.29 +0.4
648,895 + GFF1955 0.45 +1.3
648,895 + GFF1955 0.45 -0.8
648,896 - GFF1955 0.45 -0.8
648,896 - GFF1955 0.45 -0.5
648,896 - GFF1955 0.45 +1.0
648,896 - GFF1955 0.45 -0.9
648,899 + GFF1955 0.46 +0.3
648,899 + GFF1955 0.46 -0.4
648,900 - GFF1955 0.46 -0.4
648,900 - GFF1955 0.46 -0.8
648,900 - GFF1955 0.46 +0.2
649,009 - GFF1955 0.56 -0.6
649,107 - GFF1955 0.66 +0.4
649,274 + GFF1955 0.82 -0.2
649,309 + GFF1955 0.85 +0.3
649,365 + -0.2
649,365 + -0.8
649,365 + -0.8
649,375 - -1.0

Or see this region's nucleotide sequence