Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1935 and GFF1936 are separated by 34 nucleotides GFF1936 and GFF1937 are separated by 23 nucleotides GFF1937 and GFF1938 are separated by 10 nucleotides
GFF1935 - GNAT family acetyltransferase PA5433, at 628,811 to 629,524
GFF1935
GFF1936 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 629,559 to 630,404
GFF1936
GFF1937 - Hemolysins and related proteins containing CBS domains, at 630,428 to 631,741
GFF1937
GFF1938 - hypothetical protein, at 631,752 to 632,738
GFF1938
Position (kb) 630
631
632 Strain fitness (log2 ratio) -1
0
1 at 629.561 kb on - strand at 629.561 kb on - strand at 629.779 kb on + strand, within GFF1936 at 629.780 kb on - strand, within GFF1936 at 629.780 kb on - strand, within GFF1936 at 629.780 kb on - strand, within GFF1936 at 629.780 kb on - strand, within GFF1936 at 629.933 kb on - strand, within GFF1936 at 630.395 kb on - strand at 630.806 kb on + strand, within GFF1937 at 631.297 kb on - strand, within GFF1937 at 631.574 kb on + strand, within GFF1937 at 631.575 kb on - strand, within GFF1937 at 631.575 kb on - strand, within GFF1937 at 631.577 kb on - strand, within GFF1937 at 631.577 kb on - strand, within GFF1937 at 631.836 kb on + strand at 631.837 kb on - strand at 631.837 kb on - strand at 631.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 629,561 - +0.2 629,561 - +0.1 629,779 + GFF1936 0.26 +0.2 629,780 - GFF1936 0.26 -0.6 629,780 - GFF1936 0.26 +0.3 629,780 - GFF1936 0.26 +0.5 629,780 - GFF1936 0.26 +0.6 629,933 - GFF1936 0.44 -0.5 630,395 - -0.7 630,806 + GFF1937 0.29 +0.9 631,297 - GFF1937 0.66 -0.1 631,574 + GFF1937 0.87 +0.4 631,575 - GFF1937 0.87 +1.0 631,575 - GFF1937 0.87 +0.0 631,577 - GFF1937 0.87 -0.2 631,577 - GFF1937 0.87 +0.2 631,836 + +0.5 631,837 - -0.5 631,837 - -0.5 631,837 - +0.2
Or see this region's nucleotide sequence