Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1932 and GFF1933 are separated by 547 nucleotides GFF1933 and GFF1934 are separated by 95 nucleotides
GFF1932 - no description, at 614,206 to 614,988
GFF1932
GFF1933 - Alkaline phosphatase (EC 3.1.3.1), at 615,536 to 627,136
GFF1933
GFF1934 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 627,232 to 628,638
GFF1934
Position (kb) 615
616
617
618
619
620
621
622
623
624
625
626
627
628 Strain fitness (log2 ratio) -2
-1
0
1
2 at 614.578 kb on + strand, within GFF1932 at 614.653 kb on + strand, within GFF1932 at 614.790 kb on + strand, within GFF1932 at 614.898 kb on - strand, within GFF1932 at 614.987 kb on - strand at 615.185 kb on - strand at 615.185 kb on - strand at 615.185 kb on - strand at 615.425 kb on + strand at 615.456 kb on + strand at 615.464 kb on + strand at 615.513 kb on - strand at 615.532 kb on - strand at 615.535 kb on - strand at 615.623 kb on + strand at 615.707 kb on - strand at 615.839 kb on + strand at 615.938 kb on + strand at 615.939 kb on - strand at 615.976 kb on - strand at 616.043 kb on - strand at 616.109 kb on - strand at 616.455 kb on - strand at 616.455 kb on - strand at 616.725 kb on - strand, within GFF1933 at 617.186 kb on + strand, within GFF1933 at 617.186 kb on + strand, within GFF1933 at 617.186 kb on + strand, within GFF1933 at 617.187 kb on - strand, within GFF1933 at 617.412 kb on + strand, within GFF1933 at 617.819 kb on + strand, within GFF1933 at 617.959 kb on + strand, within GFF1933 at 618.001 kb on - strand, within GFF1933 at 618.001 kb on - strand, within GFF1933 at 618.082 kb on + strand, within GFF1933 at 618.216 kb on - strand, within GFF1933 at 618.216 kb on - strand, within GFF1933 at 618.354 kb on - strand, within GFF1933 at 618.354 kb on - strand, within GFF1933 at 618.392 kb on + strand, within GFF1933 at 618.393 kb on - strand, within GFF1933 at 618.636 kb on - strand, within GFF1933 at 618.705 kb on - strand, within GFF1933 at 618.792 kb on - strand, within GFF1933 at 618.884 kb on + strand, within GFF1933 at 618.885 kb on - strand, within GFF1933 at 618.885 kb on - strand, within GFF1933 at 619.103 kb on - strand, within GFF1933 at 619.289 kb on + strand, within GFF1933 at 619.289 kb on + strand, within GFF1933 at 619.290 kb on - strand, within GFF1933 at 619.432 kb on - strand, within GFF1933 at 619.432 kb on - strand, within GFF1933 at 619.656 kb on - strand, within GFF1933 at 619.814 kb on - strand, within GFF1933 at 620.253 kb on + strand, within GFF1933 at 620.675 kb on - strand, within GFF1933 at 621.003 kb on - strand, within GFF1933 at 621.260 kb on - strand, within GFF1933 at 621.263 kb on + strand, within GFF1933 at 621.263 kb on + strand, within GFF1933 at 621.264 kb on - strand, within GFF1933 at 621.264 kb on - strand, within GFF1933 at 621.264 kb on - strand, within GFF1933 at 621.341 kb on + strand, within GFF1933 at 621.342 kb on - strand, within GFF1933 at 621.442 kb on + strand, within GFF1933 at 621.506 kb on + strand, within GFF1933 at 621.506 kb on + strand, within GFF1933 at 621.507 kb on - strand, within GFF1933 at 621.507 kb on - strand, within GFF1933 at 621.532 kb on + strand, within GFF1933 at 621.776 kb on + strand, within GFF1933 at 621.776 kb on + strand, within GFF1933 at 621.776 kb on + strand, within GFF1933 at 621.776 kb on + strand, within GFF1933 at 621.776 kb on + strand, within GFF1933 at 621.776 kb on + strand, within GFF1933 at 621.776 kb on + strand, within GFF1933 at 621.777 kb on - strand, within GFF1933 at 621.777 kb on - strand, within GFF1933 at 621.777 kb on - strand, within GFF1933 at 621.777 kb on - strand, within GFF1933 at 621.795 kb on - strand, within GFF1933 at 621.920 kb on - strand, within GFF1933 at 622.052 kb on + strand, within GFF1933 at 622.052 kb on + strand, within GFF1933 at 622.052 kb on + strand, within GFF1933 at 622.052 kb on + strand, within GFF1933 at 622.052 kb on + strand, within GFF1933 at 622.053 kb on - strand, within GFF1933 at 622.053 kb on - strand, within GFF1933 at 622.131 kb on - strand, within GFF1933 at 622.169 kb on - strand, within GFF1933 at 622.210 kb on + strand, within GFF1933 at 622.211 kb on - strand, within GFF1933 at 622.344 kb on - strand, within GFF1933 at 622.344 kb on - strand, within GFF1933 at 622.372 kb on - strand, within GFF1933 at 622.412 kb on + strand, within GFF1933 at 622.413 kb on - strand, within GFF1933 at 622.435 kb on - strand, within GFF1933 at 622.435 kb on - strand, within GFF1933 at 622.435 kb on - strand, within GFF1933 at 622.539 kb on + strand, within GFF1933 at 622.539 kb on + strand, within GFF1933 at 622.540 kb on - strand, within GFF1933 at 622.542 kb on - strand, within GFF1933 at 622.680 kb on + strand, within GFF1933 at 622.680 kb on + strand, within GFF1933 at 622.681 kb on - strand, within GFF1933 at 622.929 kb on + strand, within GFF1933 at 622.980 kb on - strand, within GFF1933 at 623.011 kb on + strand, within GFF1933 at 623.011 kb on + strand, within GFF1933 at 623.012 kb on - strand, within GFF1933 at 623.129 kb on - strand, within GFF1933 at 623.160 kb on - strand, within GFF1933 at 623.239 kb on + strand, within GFF1933 at 623.314 kb on + strand, within GFF1933 at 623.315 kb on - strand, within GFF1933 at 623.642 kb on + strand, within GFF1933 at 623.643 kb on - strand, within GFF1933 at 623.685 kb on - strand, within GFF1933 at 623.778 kb on - strand, within GFF1933 at 623.935 kb on + strand, within GFF1933 at 623.943 kb on - strand, within GFF1933 at 623.965 kb on + strand, within GFF1933 at 623.966 kb on - strand, within GFF1933 at 623.996 kb on + strand, within GFF1933 at 623.997 kb on - strand, within GFF1933 at 624.043 kb on + strand, within GFF1933 at 624.044 kb on - strand, within GFF1933 at 624.097 kb on + strand, within GFF1933 at 624.097 kb on + strand, within GFF1933 at 624.097 kb on + strand, within GFF1933 at 624.182 kb on + strand, within GFF1933 at 624.288 kb on + strand, within GFF1933 at 624.288 kb on + strand, within GFF1933 at 624.288 kb on + strand, within GFF1933 at 624.288 kb on + strand, within GFF1933 at 624.289 kb on - strand, within GFF1933 at 624.289 kb on - strand, within GFF1933 at 624.593 kb on + strand, within GFF1933 at 624.594 kb on - strand, within GFF1933 at 624.671 kb on + strand, within GFF1933 at 624.671 kb on + strand, within GFF1933 at 624.672 kb on - strand, within GFF1933 at 624.672 kb on - strand, within GFF1933 at 624.672 kb on - strand, within GFF1933 at 624.672 kb on - strand, within GFF1933 at 624.672 kb on - strand, within GFF1933 at 624.876 kb on + strand, within GFF1933 at 625.133 kb on + strand, within GFF1933 at 625.325 kb on - strand, within GFF1933 at 625.325 kb on - strand, within GFF1933 at 625.416 kb on - strand, within GFF1933 at 625.474 kb on + strand, within GFF1933 at 625.569 kb on - strand, within GFF1933 at 625.569 kb on - strand, within GFF1933 at 625.672 kb on - strand, within GFF1933 at 625.672 kb on - strand, within GFF1933 at 625.672 kb on - strand, within GFF1933 at 625.672 kb on - strand, within GFF1933 at 625.672 kb on - strand, within GFF1933 at 625.718 kb on + strand, within GFF1933 at 625.719 kb on - strand, within GFF1933 at 625.736 kb on - strand, within GFF1933 at 625.911 kb on + strand, within GFF1933 at 625.999 kb on + strand at 626.000 kb on - strand at 626.000 kb on - strand at 626.065 kb on + strand at 626.065 kb on + strand at 626.065 kb on + strand at 626.084 kb on + strand at 626.084 kb on + strand at 626.189 kb on + strand at 626.190 kb on - strand at 626.226 kb on + strand at 626.268 kb on - strand at 626.268 kb on - strand at 626.297 kb on - strand at 626.346 kb on - strand at 626.448 kb on - strand at 626.492 kb on + strand at 626.499 kb on + strand at 626.520 kb on + strand at 626.609 kb on + strand at 626.610 kb on - strand at 626.610 kb on - strand at 626.664 kb on - strand at 626.711 kb on - strand at 626.739 kb on + strand at 626.741 kb on + strand at 626.741 kb on + strand at 626.811 kb on + strand at 626.933 kb on + strand at 626.934 kb on - strand at 626.935 kb on + strand at 626.936 kb on - strand at 626.936 kb on - strand at 626.936 kb on - strand at 626.936 kb on - strand at 626.971 kb on + strand at 627.115 kb on + strand at 627.211 kb on + strand at 627.211 kb on + strand at 627.211 kb on + strand at 627.225 kb on + strand at 627.225 kb on + strand at 627.226 kb on - strand at 627.226 kb on - strand at 627.306 kb on + strand at 627.306 kb on + strand at 627.902 kb on + strand, within GFF1934 at 627.923 kb on + strand, within GFF1934
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 614,578 + GFF1932 0.48 +0.4 614,653 + GFF1932 0.57 -0.4 614,790 + GFF1932 0.75 -0.1 614,898 - GFF1932 0.88 -0.3 614,987 - -0.7 615,185 - +1.1 615,185 - -0.6 615,185 - -0.5 615,425 + -1.1 615,456 + +0.1 615,464 + +0.9 615,513 - -0.7 615,532 - +0.4 615,535 - -0.4 615,623 + +0.3 615,707 - +1.0 615,839 + -0.4 615,938 + +1.5 615,939 - +0.6 615,976 - +1.0 616,043 - -1.1 616,109 - +0.1 616,455 - +0.1 616,455 - +0.2 616,725 - GFF1933 0.10 -0.6 617,186 + GFF1933 0.14 -0.5 617,186 + GFF1933 0.14 -1.0 617,186 + GFF1933 0.14 +0.6 617,187 - GFF1933 0.14 -0.2 617,412 + GFF1933 0.16 -0.9 617,819 + GFF1933 0.20 -1.4 617,959 + GFF1933 0.21 -1.3 618,001 - GFF1933 0.21 -0.5 618,001 - GFF1933 0.21 +1.7 618,082 + GFF1933 0.22 -0.5 618,216 - GFF1933 0.23 +0.7 618,216 - GFF1933 0.23 -0.4 618,354 - GFF1933 0.24 -0.1 618,354 - GFF1933 0.24 -0.9 618,392 + GFF1933 0.25 +0.4 618,393 - GFF1933 0.25 +0.5 618,636 - GFF1933 0.27 -0.5 618,705 - GFF1933 0.27 -0.5 618,792 - GFF1933 0.28 -0.9 618,884 + GFF1933 0.29 -0.5 618,885 - GFF1933 0.29 +2.2 618,885 - GFF1933 0.29 +0.3 619,103 - GFF1933 0.31 -0.7 619,289 + GFF1933 0.32 +0.2 619,289 + GFF1933 0.32 +0.7 619,290 - GFF1933 0.32 -0.8 619,432 - GFF1933 0.34 -0.8 619,432 - GFF1933 0.34 +0.7 619,656 - GFF1933 0.36 -0.1 619,814 - GFF1933 0.37 -0.9 620,253 + GFF1933 0.41 -0.3 620,675 - GFF1933 0.44 +0.6 621,003 - GFF1933 0.47 -0.6 621,260 - GFF1933 0.49 -0.2 621,263 + GFF1933 0.49 +0.7 621,263 + GFF1933 0.49 +0.1 621,264 - GFF1933 0.49 +0.5 621,264 - GFF1933 0.49 -1.6 621,264 - GFF1933 0.49 -0.5 621,341 + GFF1933 0.50 -0.6 621,342 - GFF1933 0.50 -0.9 621,442 + GFF1933 0.51 -0.3 621,506 + GFF1933 0.51 -1.2 621,506 + GFF1933 0.51 -2.1 621,507 - GFF1933 0.51 +1.1 621,507 - GFF1933 0.51 +0.1 621,532 + GFF1933 0.52 +0.3 621,776 + GFF1933 0.54 +0.1 621,776 + GFF1933 0.54 -0.2 621,776 + GFF1933 0.54 +0.8 621,776 + GFF1933 0.54 -0.3 621,776 + GFF1933 0.54 -0.2 621,776 + GFF1933 0.54 -1.5 621,776 + GFF1933 0.54 -1.0 621,777 - GFF1933 0.54 +0.1 621,777 - GFF1933 0.54 -0.7 621,777 - GFF1933 0.54 +0.7 621,777 - GFF1933 0.54 +0.4 621,795 - GFF1933 0.54 -0.9 621,920 - GFF1933 0.55 -0.1 622,052 + GFF1933 0.56 +0.0 622,052 + GFF1933 0.56 +0.5 622,052 + GFF1933 0.56 +0.1 622,052 + GFF1933 0.56 +1.4 622,052 + GFF1933 0.56 -0.7 622,053 - GFF1933 0.56 -1.0 622,053 - GFF1933 0.56 +0.4 622,131 - GFF1933 0.57 +0.7 622,169 - GFF1933 0.57 +0.3 622,210 + GFF1933 0.58 -1.0 622,211 - GFF1933 0.58 +0.2 622,344 - GFF1933 0.59 +1.0 622,344 - GFF1933 0.59 +0.7 622,372 - GFF1933 0.59 +0.6 622,412 + GFF1933 0.59 -0.2 622,413 - GFF1933 0.59 -0.7 622,435 - GFF1933 0.59 -0.2 622,435 - GFF1933 0.59 -0.0 622,435 - GFF1933 0.59 -0.1 622,539 + GFF1933 0.60 -1.0 622,539 + GFF1933 0.60 -0.3 622,540 - GFF1933 0.60 -1.6 622,542 - GFF1933 0.60 -0.3 622,680 + GFF1933 0.62 +0.4 622,680 + GFF1933 0.62 +0.1 622,681 - GFF1933 0.62 +0.9 622,929 + GFF1933 0.64 -0.4 622,980 - GFF1933 0.64 -0.3 623,011 + GFF1933 0.64 +0.5 623,011 + GFF1933 0.64 +0.2 623,012 - GFF1933 0.64 -0.3 623,129 - GFF1933 0.65 -0.6 623,160 - GFF1933 0.66 +0.2 623,239 + GFF1933 0.66 -0.7 623,314 + GFF1933 0.67 +1.4 623,315 - GFF1933 0.67 -0.2 623,642 + GFF1933 0.70 +0.6 623,643 - GFF1933 0.70 +0.3 623,685 - GFF1933 0.70 +0.1 623,778 - GFF1933 0.71 +0.5 623,935 + GFF1933 0.72 -0.3 623,943 - GFF1933 0.72 +2.1 623,965 + GFF1933 0.73 +0.4 623,966 - GFF1933 0.73 +1.7 623,996 + GFF1933 0.73 -0.5 623,997 - GFF1933 0.73 -1.6 624,043 + GFF1933 0.73 +0.7 624,044 - GFF1933 0.73 -0.3 624,097 + GFF1933 0.74 +0.1 624,097 + GFF1933 0.74 -0.4 624,097 + GFF1933 0.74 -0.8 624,182 + GFF1933 0.75 +0.7 624,288 + GFF1933 0.75 -1.9 624,288 + GFF1933 0.75 +0.2 624,288 + GFF1933 0.75 -0.4 624,288 + GFF1933 0.75 -0.8 624,289 - GFF1933 0.75 -0.1 624,289 - GFF1933 0.75 +0.4 624,593 + GFF1933 0.78 -0.8 624,594 - GFF1933 0.78 -0.3 624,671 + GFF1933 0.79 -0.7 624,671 + GFF1933 0.79 +0.2 624,672 - GFF1933 0.79 +0.1 624,672 - GFF1933 0.79 +0.3 624,672 - GFF1933 0.79 -0.5 624,672 - GFF1933 0.79 +0.7 624,672 - GFF1933 0.79 +0.0 624,876 + GFF1933 0.81 -0.4 625,133 + GFF1933 0.83 -0.4 625,325 - GFF1933 0.84 +0.2 625,325 - GFF1933 0.84 -0.4 625,416 - GFF1933 0.85 +0.4 625,474 + GFF1933 0.86 +0.7 625,569 - GFF1933 0.86 -0.3 625,569 - GFF1933 0.86 -0.4 625,672 - GFF1933 0.87 -0.2 625,672 - GFF1933 0.87 +0.9 625,672 - GFF1933 0.87 +1.7 625,672 - GFF1933 0.87 -0.2 625,672 - GFF1933 0.87 +0.1 625,718 + GFF1933 0.88 -0.3 625,719 - GFF1933 0.88 +0.7 625,736 - GFF1933 0.88 +1.4 625,911 + GFF1933 0.89 -0.9 625,999 + -0.2 626,000 - +0.2 626,000 - -0.9 626,065 + +1.6 626,065 + -0.1 626,065 + +0.1 626,084 + +0.3 626,084 + +1.7 626,189 + -0.0 626,190 - -0.6 626,226 + +0.5 626,268 - -0.3 626,268 - +0.4 626,297 - +1.0 626,346 - +0.3 626,448 - +0.1 626,492 + +0.4 626,499 + -0.3 626,520 + -0.2 626,609 + -0.2 626,610 - -0.8 626,610 - -0.2 626,664 - -0.9 626,711 - -0.2 626,739 + -1.6 626,741 + -0.0 626,741 + +1.1 626,811 + +0.4 626,933 + -0.3 626,934 - +1.1 626,935 + +2.1 626,936 - -0.9 626,936 - -0.1 626,936 - -0.0 626,936 - +0.3 626,971 + -0.4 627,115 + +0.3 627,211 + -1.6 627,211 + +1.2 627,211 + -0.2 627,225 + -0.3 627,225 + +0.5 627,226 - +0.0 627,226 - +1.3 627,306 + -0.0 627,306 + -0.7 627,902 + GFF1934 0.48 -0.0 627,923 + GFF1934 0.49 +0.9
Or see this region's nucleotide sequence