Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1926 and GFF1927 overlap by 4 nucleotides GFF1927 and GFF1928 are separated by 100 nucleotides GFF1928 and GFF1929 are separated by 85 nucleotides
GFF1926 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 606,451 to 607,458
GFF1926
GFF1927 - Alkanesulfonates-binding protein, at 607,455 to 608,435
GFF1927
GFF1928 - Fumarylacetoacetate hydrolase family protein, at 608,536 to 609,225
GFF1928
GFF1929 - Transcriptional regulator, AraC family, at 609,311 to 610,228
GFF1929
Position (kb) 607
608
609 Strain fitness (log2 ratio) -1
0
1
2 at 606.673 kb on + strand, within GFF1926 at 606.674 kb on - strand, within GFF1926 at 606.674 kb on - strand, within GFF1926 at 607.051 kb on + strand, within GFF1926 at 607.051 kb on + strand, within GFF1926 at 607.082 kb on - strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.115 kb on - strand, within GFF1926 at 607.115 kb on - strand, within GFF1926 at 607.220 kb on - strand, within GFF1926 at 607.220 kb on - strand, within GFF1926 at 607.265 kb on - strand, within GFF1926 at 607.265 kb on - strand, within GFF1926 at 607.366 kb on + strand at 607.367 kb on - strand at 607.654 kb on - strand, within GFF1927 at 607.911 kb on + strand, within GFF1927 at 607.911 kb on + strand, within GFF1927 at 607.912 kb on - strand, within GFF1927 at 607.912 kb on - strand, within GFF1927 at 608.044 kb on - strand, within GFF1927 at 608.118 kb on + strand, within GFF1927 at 608.119 kb on - strand, within GFF1927 at 608.119 kb on - strand, within GFF1927 at 608.464 kb on + strand at 608.464 kb on + strand at 608.465 kb on - strand at 608.470 kb on - strand at 608.470 kb on - strand at 608.490 kb on + strand at 608.491 kb on - strand at 608.545 kb on + strand at 608.545 kb on + strand at 608.546 kb on - strand at 608.546 kb on - strand at 608.638 kb on + strand, within GFF1928 at 608.638 kb on + strand, within GFF1928 at 608.638 kb on + strand, within GFF1928 at 608.846 kb on - strand, within GFF1928 at 609.085 kb on + strand, within GFF1928 at 609.271 kb on - strand at 609.271 kb on - strand at 609.273 kb on + strand at 609.273 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.345 kb on - strand at 609.345 kb on - strand at 609.345 kb on - strand at 609.434 kb on + strand, within GFF1929 at 609.435 kb on - strand, within GFF1929 at 609.435 kb on - strand, within GFF1929 at 609.435 kb on - strand, within GFF1929
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 606,673 + GFF1926 0.22 -0.6 606,674 - GFF1926 0.22 +1.1 606,674 - GFF1926 0.22 -0.1 607,051 + GFF1926 0.60 +0.6 607,051 + GFF1926 0.60 -1.2 607,082 - GFF1926 0.63 -0.2 607,114 + GFF1926 0.66 -0.3 607,114 + GFF1926 0.66 +0.2 607,114 + GFF1926 0.66 -0.5 607,115 - GFF1926 0.66 +0.5 607,115 - GFF1926 0.66 -0.3 607,220 - GFF1926 0.76 +0.7 607,220 - GFF1926 0.76 +0.7 607,265 - GFF1926 0.81 +0.7 607,265 - GFF1926 0.81 +1.4 607,366 + -1.1 607,367 - +0.1 607,654 - GFF1927 0.20 +0.7 607,911 + GFF1927 0.46 -0.2 607,911 + GFF1927 0.46 +0.1 607,912 - GFF1927 0.47 +0.6 607,912 - GFF1927 0.47 -0.3 608,044 - GFF1927 0.60 +0.5 608,118 + GFF1927 0.68 +0.4 608,119 - GFF1927 0.68 -0.2 608,119 - GFF1927 0.68 +0.7 608,464 + -1.3 608,464 + +2.1 608,465 - -0.1 608,470 - -0.3 608,470 - +0.2 608,490 + -0.0 608,491 - -0.3 608,545 + +0.7 608,545 + +0.7 608,546 - -0.4 608,546 - -0.2 608,638 + GFF1928 0.15 -0.6 608,638 + GFF1928 0.15 +0.2 608,638 + GFF1928 0.15 +0.2 608,846 - GFF1928 0.45 -0.3 609,085 + GFF1928 0.80 -0.1 609,271 - +0.6 609,271 - +0.2 609,273 + -0.1 609,273 + -0.1 609,344 + +0.5 609,344 + -0.6 609,344 + +0.1 609,344 + +0.5 609,345 - +1.5 609,345 - -0.2 609,345 - -0.8 609,434 + GFF1929 0.13 +0.3 609,435 - GFF1929 0.14 -1.0 609,435 - GFF1929 0.14 +1.1 609,435 - GFF1929 0.14 -0.4
Or see this region's nucleotide sequence