Strain Fitness in Variovorax sp. SCN45 around GFF1921

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1919 and GFF1920 overlap by 4 nucleotidesGFF1920 and GFF1921 overlap by 4 nucleotidesGFF1921 and GFF1922 overlap by 4 nucleotides GFF1919 - Rhodanese-related sulfurtransferase, 4 domains, at 598,805 to 600,475 GFF1919 GFF1920 - Cysteine dioxygenase (EC 1.13.11.20), at 600,472 to 601,077 GFF1920 GFF1921 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 601,074 to 602,063 GFF1921 GFF1922 - Acyl-CoA dehydrogenase, at 602,060 to 603,304 GFF1922 Position (kb) 601 602 603Strain fitness (log2 ratio) -1 0 1 2at 600.207 kb on + strand, within GFF1919at 600.271 kb on - strand, within GFF1919at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.581 kb on + strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.582 kb on - strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.585 kb on + strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.586 kb on - strand, within GFF1920at 600.779 kb on + strand, within GFF1920at 600.780 kb on - strand, within GFF1920at 600.914 kb on + strand, within GFF1920at 601.274 kb on - strand, within GFF1921at 601.285 kb on + strand, within GFF1921at 601.286 kb on - strand, within GFF1921at 601.286 kb on - strand, within GFF1921at 601.468 kb on + strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.469 kb on - strand, within GFF1921at 601.472 kb on - strand, within GFF1921at 601.472 kb on - strand, within GFF1921at 601.595 kb on - strand, within GFF1921at 601.595 kb on - strand, within GFF1921at 601.603 kb on + strand, within GFF1921at 601.603 kb on + strand, within GFF1921at 601.603 kb on + strand, within GFF1921at 601.604 kb on - strand, within GFF1921at 601.604 kb on - strand, within GFF1921at 601.862 kb on - strand, within GFF1921at 602.131 kb on + strandat 602.131 kb on + strandat 602.131 kb on + strandat 602.132 kb on - strandat 602.132 kb on - strandat 602.257 kb on - strand, within GFF1922at 602.478 kb on + strand, within GFF1922at 602.478 kb on + strand, within GFF1922at 602.788 kb on - strand, within GFF1922at 602.994 kb on + strand, within GFF1922at 602.994 kb on + strand, within GFF1922at 602.994 kb on + strand, within GFF1922at 602.995 kb on - strand, within GFF1922at 602.995 kb on - strand, within GFF1922at 602.995 kb on - strand, within GFF1922at 602.995 kb on - strand, within GFF1922

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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600,207 + GFF1919 0.84 +1.0
600,271 - GFF1919 0.88 -0.9
600,581 + GFF1920 0.18 +0.0
600,581 + GFF1920 0.18 -0.9
600,581 + GFF1920 0.18 +0.0
600,581 + GFF1920 0.18 +0.3
600,581 + GFF1920 0.18 -0.5
600,582 - GFF1920 0.18 -1.0
600,582 - GFF1920 0.18 -0.1
600,582 - GFF1920 0.18 -0.4
600,582 - GFF1920 0.18 +0.9
600,585 + GFF1920 0.19 -0.1
600,585 + GFF1920 0.19 +0.0
600,585 + GFF1920 0.19 -0.6
600,586 - GFF1920 0.19 -0.3
600,586 - GFF1920 0.19 -0.7
600,586 - GFF1920 0.19 +0.1
600,779 + GFF1920 0.51 -1.5
600,780 - GFF1920 0.51 +0.1
600,914 + GFF1920 0.73 -0.3
601,274 - GFF1921 0.20 +1.0
601,285 + GFF1921 0.21 -0.3
601,286 - GFF1921 0.21 -0.5
601,286 - GFF1921 0.21 -0.2
601,468 + GFF1921 0.40 -0.2
601,469 - GFF1921 0.40 -0.4
601,469 - GFF1921 0.40 +0.3
601,469 - GFF1921 0.40 -0.6
601,469 - GFF1921 0.40 +0.4
601,469 - GFF1921 0.40 +0.5
601,472 - GFF1921 0.40 +0.2
601,472 - GFF1921 0.40 +0.7
601,595 - GFF1921 0.53 +2.7
601,595 - GFF1921 0.53 -1.3
601,603 + GFF1921 0.53 -0.4
601,603 + GFF1921 0.53 +0.5
601,603 + GFF1921 0.53 -0.2
601,604 - GFF1921 0.54 +0.4
601,604 - GFF1921 0.54 -0.2
601,862 - GFF1921 0.80 -0.5
602,131 + +0.6
602,131 + -0.4
602,131 + +0.9
602,132 - +0.7
602,132 - -0.5
602,257 - GFF1922 0.16 +0.2
602,478 + GFF1922 0.34 +0.9
602,478 + GFF1922 0.34 -0.2
602,788 - GFF1922 0.58 -0.3
602,994 + GFF1922 0.75 -0.1
602,994 + GFF1922 0.75 -0.1
602,994 + GFF1922 0.75 -1.7
602,995 - GFF1922 0.75 -0.0
602,995 - GFF1922 0.75 +0.0
602,995 - GFF1922 0.75 +0.0
602,995 - GFF1922 0.75 -0.5

Or see this region's nucleotide sequence