Strain Fitness in Variovorax sp. SCN45 around GFF1918

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1917 and GFF1918 are separated by 59 nucleotidesGFF1918 and GFF1919 are separated by 114 nucleotides GFF1917 - ATP-dependent RNA helicase Bcep18194_A5658, at 596,937 to 598,406 GFF1917 GFF1918 - hypothetical protein, at 598,466 to 598,690 GFF1918 GFF1919 - Rhodanese-related sulfurtransferase, 4 domains, at 598,805 to 600,475 GFF1919 Position (kb) 598 599Strain fitness (log2 ratio) -2 -1 0 1 2 3at 597.474 kb on + strand, within GFF1917at 597.475 kb on - strand, within GFF1917at 597.549 kb on + strand, within GFF1917at 597.549 kb on + strand, within GFF1917at 597.550 kb on - strand, within GFF1917at 597.550 kb on - strand, within GFF1917at 597.889 kb on + strand, within GFF1917at 597.889 kb on + strand, within GFF1917at 597.889 kb on + strand, within GFF1917at 597.933 kb on + strand, within GFF1917at 597.934 kb on - strand, within GFF1917at 598.273 kb on - strandat 598.273 kb on - strandat 598.273 kb on - strandat 598.492 kb on - strand, within GFF1918at 598.530 kb on + strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.531 kb on - strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.563 kb on + strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.564 kb on - strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.578 kb on + strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.579 kb on - strand, within GFF1918at 598.721 kb on + strandat 598.721 kb on + strandat 598.722 kb on - strandat 598.782 kb on + strandat 598.782 kb on + strandat 598.782 kb on + strandat 598.783 kb on - strandat 598.783 kb on - strandat 598.783 kb on - strandat 598.900 kb on - strandat 598.914 kb on + strandat 598.914 kb on + strandat 598.915 kb on - strandat 598.915 kb on - strandat 598.915 kb on - strandat 598.953 kb on + strandat 598.954 kb on - strandat 599.119 kb on - strand, within GFF1919at 599.155 kb on - strand, within GFF1919at 599.214 kb on + strand, within GFF1919at 599.214 kb on + strand, within GFF1919at 599.215 kb on - strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.244 kb on + strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.245 kb on - strand, within GFF1919at 599.619 kb on + strand, within GFF1919at 599.620 kb on - strand, within GFF1919at 599.620 kb on - strand, within GFF1919

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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597,474 + GFF1917 0.37 +0.8
597,475 - GFF1917 0.37 +1.7
597,549 + GFF1917 0.42 +0.0
597,549 + GFF1917 0.42 +2.8
597,550 - GFF1917 0.42 -1.6
597,550 - GFF1917 0.42 +0.4
597,889 + GFF1917 0.65 +0.9
597,889 + GFF1917 0.65 -0.5
597,889 + GFF1917 0.65 -0.5
597,933 + GFF1917 0.68 -0.6
597,934 - GFF1917 0.68 -0.4
598,273 - +0.3
598,273 - +1.1
598,273 - +1.0
598,492 - GFF1918 0.12 -0.7
598,530 + GFF1918 0.28 +1.1
598,531 - GFF1918 0.29 +0.3
598,531 - GFF1918 0.29 +1.3
598,531 - GFF1918 0.29 -0.9
598,531 - GFF1918 0.29 -0.1
598,563 + GFF1918 0.43 -0.2
598,563 + GFF1918 0.43 +0.5
598,563 + GFF1918 0.43 -0.5
598,563 + GFF1918 0.43 -1.3
598,563 + GFF1918 0.43 +1.2
598,563 + GFF1918 0.43 +0.2
598,563 + GFF1918 0.43 +1.0
598,563 + GFF1918 0.43 -0.6
598,564 - GFF1918 0.44 -1.9
598,564 - GFF1918 0.44 +0.0
598,564 - GFF1918 0.44 -0.1
598,564 - GFF1918 0.44 +0.8
598,564 - GFF1918 0.44 -0.5
598,564 - GFF1918 0.44 -1.7
598,564 - GFF1918 0.44 +0.7
598,564 - GFF1918 0.44 -0.4
598,564 - GFF1918 0.44 +0.1
598,564 - GFF1918 0.44 +0.8
598,564 - GFF1918 0.44 +1.4
598,564 - GFF1918 0.44 +0.5
598,564 - GFF1918 0.44 -0.9
598,564 - GFF1918 0.44 +1.0
598,578 + GFF1918 0.50 -0.7
598,578 + GFF1918 0.50 -0.2
598,578 + GFF1918 0.50 -0.5
598,578 + GFF1918 0.50 -0.2
598,579 - GFF1918 0.50 +0.1
598,579 - GFF1918 0.50 +0.3
598,579 - GFF1918 0.50 +0.4
598,579 - GFF1918 0.50 +1.1
598,721 + -0.7
598,721 + -0.5
598,722 - -0.5
598,782 + -1.1
598,782 + +0.5
598,782 + +0.5
598,783 - -0.1
598,783 - -1.0
598,783 - +0.1
598,900 - +0.4
598,914 + -0.1
598,914 + -0.5
598,915 - +0.1
598,915 - -0.2
598,915 - -0.1
598,953 + -0.0
598,954 - -1.2
599,119 - GFF1919 0.19 +1.1
599,155 - GFF1919 0.21 -0.6
599,214 + GFF1919 0.24 -0.7
599,214 + GFF1919 0.24 -0.2
599,215 - GFF1919 0.25 -0.1
599,244 + GFF1919 0.26 +0.6
599,244 + GFF1919 0.26 +2.1
599,244 + GFF1919 0.26 -1.0
599,244 + GFF1919 0.26 +0.7
599,244 + GFF1919 0.26 -1.0
599,244 + GFF1919 0.26 +0.7
599,244 + GFF1919 0.26 +0.0
599,245 - GFF1919 0.26 -1.0
599,245 - GFF1919 0.26 +0.4
599,245 - GFF1919 0.26 -0.2
599,245 - GFF1919 0.26 -0.2
599,245 - GFF1919 0.26 -0.1
599,245 - GFF1919 0.26 +0.7
599,619 + GFF1919 0.49 -0.0
599,620 - GFF1919 0.49 -1.7
599,620 - GFF1919 0.49 -0.1

Or see this region's nucleotide sequence