Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1900 and GFF1901 are separated by 158 nucleotides GFF1901 and GFF1902 are separated by 29 nucleotides GFF1902 and GFF1903 are separated by 267 nucleotides
GFF1900 - Transcriptional regulator, LysR family, at 577,892 to 578,809
GFF1900
GFF1901 - no description, at 578,968 to 579,612
GFF1901
GFF1902 - hypothetical protein, at 579,642 to 581,852
GFF1902
GFF1903 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 582,120 to 584,678
GFF1903
Position (kb) 579
580
581
582 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 578.666 kb on + strand, within GFF1900 at 578.667 kb on - strand, within GFF1900 at 578.667 kb on - strand, within GFF1900 at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.737 kb on + strand at 578.737 kb on + strand at 578.737 kb on + strand at 578.737 kb on + strand at 578.853 kb on + strand at 578.893 kb on - strand at 578.893 kb on - strand at 578.948 kb on + strand at 578.963 kb on + strand at 578.963 kb on + strand at 578.964 kb on - strand at 578.964 kb on - strand at 578.964 kb on - strand at 578.964 kb on - strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.966 kb on - strand at 578.966 kb on - strand at 578.966 kb on - strand at 578.966 kb on - strand at 578.966 kb on - strand at 578.966 kb on - strand at 579.288 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.670 kb on - strand at 579.721 kb on - strand at 579.721 kb on - strand at 579.735 kb on + strand at 579.736 kb on - strand at 579.902 kb on + strand, within GFF1902 at 579.943 kb on + strand, within GFF1902 at 579.943 kb on + strand, within GFF1902 at 579.943 kb on + strand, within GFF1902 at 579.966 kb on + strand, within GFF1902 at 580.022 kb on + strand, within GFF1902 at 580.077 kb on + strand, within GFF1902 at 580.077 kb on + strand, within GFF1902 at 580.077 kb on + strand, within GFF1902 at 580.078 kb on - strand, within GFF1902 at 580.329 kb on + strand, within GFF1902 at 580.329 kb on + strand, within GFF1902 at 580.330 kb on - strand, within GFF1902 at 580.330 kb on - strand, within GFF1902 at 580.386 kb on + strand, within GFF1902 at 580.452 kb on + strand, within GFF1902 at 580.452 kb on + strand, within GFF1902 at 580.452 kb on + strand, within GFF1902 at 580.452 kb on + strand, within GFF1902 at 580.452 kb on + strand, within GFF1902 at 580.453 kb on - strand, within GFF1902 at 580.453 kb on - strand, within GFF1902 at 580.453 kb on - strand, within GFF1902 at 580.453 kb on - strand, within GFF1902 at 580.453 kb on - strand, within GFF1902 at 580.453 kb on - strand, within GFF1902 at 580.701 kb on + strand, within GFF1902 at 580.701 kb on + strand, within GFF1902 at 580.701 kb on + strand, within GFF1902 at 580.702 kb on - strand, within GFF1902 at 580.702 kb on - strand, within GFF1902 at 580.763 kb on + strand, within GFF1902 at 580.763 kb on + strand, within GFF1902 at 580.763 kb on + strand, within GFF1902 at 580.764 kb on - strand, within GFF1902 at 580.764 kb on - strand, within GFF1902 at 580.764 kb on - strand, within GFF1902 at 580.783 kb on - strand, within GFF1902 at 580.784 kb on + strand, within GFF1902 at 580.784 kb on + strand, within GFF1902 at 580.784 kb on + strand, within GFF1902 at 580.784 kb on + strand, within GFF1902 at 580.785 kb on - strand, within GFF1902 at 580.785 kb on - strand, within GFF1902 at 580.785 kb on - strand, within GFF1902 at 580.785 kb on - strand, within GFF1902 at 580.788 kb on + strand, within GFF1902 at 580.788 kb on + strand, within GFF1902 at 580.788 kb on + strand, within GFF1902 at 580.789 kb on - strand, within GFF1902 at 580.827 kb on + strand, within GFF1902 at 580.827 kb on + strand, within GFF1902 at 580.828 kb on - strand, within GFF1902 at 580.828 kb on - strand, within GFF1902 at 580.828 kb on - strand, within GFF1902 at 580.828 kb on - strand, within GFF1902 at 580.908 kb on + strand, within GFF1902 at 580.909 kb on - strand, within GFF1902 at 580.909 kb on - strand, within GFF1902 at 580.939 kb on - strand, within GFF1902 at 581.070 kb on + strand, within GFF1902 at 581.071 kb on - strand, within GFF1902 at 581.193 kb on + strand, within GFF1902 at 581.193 kb on + strand, within GFF1902 at 581.193 kb on + strand, within GFF1902 at 581.194 kb on - strand, within GFF1902 at 581.194 kb on - strand, within GFF1902 at 581.194 kb on - strand, within GFF1902 at 581.194 kb on - strand, within GFF1902 at 581.334 kb on + strand, within GFF1902 at 581.335 kb on - strand, within GFF1902 at 581.376 kb on + strand, within GFF1902 at 581.376 kb on + strand, within GFF1902 at 581.377 kb on - strand, within GFF1902 at 581.377 kb on - strand, within GFF1902 at 581.412 kb on + strand, within GFF1902 at 581.412 kb on + strand, within GFF1902 at 581.412 kb on + strand, within GFF1902 at 581.412 kb on + strand, within GFF1902 at 581.412 kb on + strand, within GFF1902 at 581.413 kb on - strand, within GFF1902 at 581.413 kb on - strand, within GFF1902 at 581.560 kb on + strand, within GFF1902 at 581.995 kb on - strand at 581.995 kb on - strand at 581.995 kb on - strand at 582.075 kb on + strand at 582.076 kb on - strand at 582.076 kb on - strand at 582.285 kb on + strand at 582.285 kb on + strand at 582.285 kb on + strand at 582.285 kb on + strand at 582.285 kb on + strand at 582.286 kb on - strand at 582.286 kb on - strand at 582.286 kb on - strand at 582.286 kb on - strand at 582.286 kb on - strand at 582.286 kb on - strand at 582.287 kb on + strand at 582.287 kb on + strand at 582.288 kb on - strand at 582.288 kb on - strand at 582.288 kb on - strand at 582.298 kb on + strand at 582.420 kb on + strand, within GFF1903 at 582.421 kb on - strand, within GFF1903 at 582.441 kb on + strand, within GFF1903 at 582.609 kb on + strand, within GFF1903 at 582.705 kb on + strand, within GFF1903 at 582.705 kb on + strand, within GFF1903 at 582.705 kb on + strand, within GFF1903 at 582.705 kb on + strand, within GFF1903 at 582.705 kb on + strand, within GFF1903 at 582.706 kb on - strand, within GFF1903 at 582.717 kb on + strand, within GFF1903 at 582.717 kb on + strand, within GFF1903 at 582.717 kb on + strand, within GFF1903 at 582.717 kb on + strand, within GFF1903 at 582.717 kb on + strand, within GFF1903 at 582.717 kb on + strand, within GFF1903 at 582.717 kb on + strand, within GFF1903 at 582.717 kb on + strand, within GFF1903 at 582.718 kb on - strand, within GFF1903 at 582.718 kb on - strand, within GFF1903 at 582.718 kb on - strand, within GFF1903 at 582.742 kb on - strand, within GFF1903 at 582.742 kb on - strand, within GFF1903 at 582.742 kb on - strand, within GFF1903
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 578,666 + GFF1900 0.84 -0.6 578,667 - GFF1900 0.84 +0.0 578,667 - GFF1900 0.84 +0.4 578,729 + -1.0 578,729 + +0.7 578,729 + +0.7 578,729 + +0.2 578,729 + -0.0 578,729 + +0.2 578,729 + -0.5 578,729 + -0.3 578,729 + +0.6 578,729 + -0.4 578,729 + -0.2 578,729 + -0.4 578,729 + +0.5 578,729 + +1.1 578,730 - -0.7 578,730 - -0.2 578,730 - -0.7 578,730 - +0.1 578,730 - +0.9 578,730 - -0.8 578,730 - -0.3 578,737 + +1.1 578,737 + -0.5 578,737 + -1.0 578,737 + +2.1 578,853 + -1.1 578,893 - +0.4 578,893 - -0.4 578,948 + -0.7 578,963 + +0.3 578,963 + -1.6 578,964 - +0.0 578,964 - -0.4 578,964 - +0.0 578,964 - -0.6 578,965 + +1.7 578,965 + -1.9 578,965 + -0.1 578,965 + +0.6 578,965 + +0.9 578,965 + +1.3 578,966 - -0.9 578,966 - +0.5 578,966 - +0.7 578,966 - +0.3 578,966 - -0.1 578,966 - -0.5 579,288 + GFF1901 0.50 -1.1 579,442 + GFF1901 0.73 +0.3 579,442 + GFF1901 0.73 -0.1 579,442 + GFF1901 0.73 -0.4 579,442 + GFF1901 0.73 -0.4 579,442 + GFF1901 0.73 -0.1 579,442 + GFF1901 0.73 +0.1 579,443 - GFF1901 0.74 +0.6 579,443 - GFF1901 0.74 -0.1 579,443 - GFF1901 0.74 +0.1 579,443 - GFF1901 0.74 -0.4 579,443 - GFF1901 0.74 +0.5 579,670 - -0.7 579,721 - -0.7 579,721 - -0.5 579,735 + -0.4 579,736 - -0.5 579,902 + GFF1902 0.12 -0.6 579,943 + GFF1902 0.14 -0.4 579,943 + GFF1902 0.14 -0.2 579,943 + GFF1902 0.14 +0.0 579,966 + GFF1902 0.15 -1.6 580,022 + GFF1902 0.17 -0.8 580,077 + GFF1902 0.20 -0.3 580,077 + GFF1902 0.20 +0.2 580,077 + GFF1902 0.20 -1.2 580,078 - GFF1902 0.20 -0.1 580,329 + GFF1902 0.31 -0.1 580,329 + GFF1902 0.31 -0.7 580,330 - GFF1902 0.31 +0.3 580,330 - GFF1902 0.31 +0.4 580,386 + GFF1902 0.34 -0.3 580,452 + GFF1902 0.37 -0.0 580,452 + GFF1902 0.37 -0.4 580,452 + GFF1902 0.37 -0.1 580,452 + GFF1902 0.37 +0.7 580,452 + GFF1902 0.37 -0.0 580,453 - GFF1902 0.37 +0.1 580,453 - GFF1902 0.37 -0.2 580,453 - GFF1902 0.37 +2.1 580,453 - GFF1902 0.37 -0.6 580,453 - GFF1902 0.37 -0.1 580,453 - GFF1902 0.37 +0.5 580,701 + GFF1902 0.48 -0.6 580,701 + GFF1902 0.48 +0.2 580,701 + GFF1902 0.48 -0.2 580,702 - GFF1902 0.48 -0.2 580,702 - GFF1902 0.48 -0.6 580,763 + GFF1902 0.51 -0.5 580,763 + GFF1902 0.51 -0.1 580,763 + GFF1902 0.51 -1.3 580,764 - GFF1902 0.51 -0.2 580,764 - GFF1902 0.51 +0.9 580,764 - GFF1902 0.51 -1.4 580,783 - GFF1902 0.52 +0.5 580,784 + GFF1902 0.52 -0.2 580,784 + GFF1902 0.52 +0.4 580,784 + GFF1902 0.52 +0.1 580,784 + GFF1902 0.52 +1.1 580,785 - GFF1902 0.52 -0.1 580,785 - GFF1902 0.52 +0.2 580,785 - GFF1902 0.52 +0.0 580,785 - GFF1902 0.52 -0.3 580,788 + GFF1902 0.52 +0.2 580,788 + GFF1902 0.52 -0.8 580,788 + GFF1902 0.52 +1.2 580,789 - GFF1902 0.52 +0.1 580,827 + GFF1902 0.54 -0.4 580,827 + GFF1902 0.54 -0.2 580,828 - GFF1902 0.54 +0.4 580,828 - GFF1902 0.54 -0.3 580,828 - GFF1902 0.54 -0.4 580,828 - GFF1902 0.54 +0.1 580,908 + GFF1902 0.57 -0.3 580,909 - GFF1902 0.57 -0.1 580,909 - GFF1902 0.57 -0.1 580,939 - GFF1902 0.59 -0.1 581,070 + GFF1902 0.65 -1.3 581,071 - GFF1902 0.65 -0.8 581,193 + GFF1902 0.70 +0.1 581,193 + GFF1902 0.70 -0.5 581,193 + GFF1902 0.70 -1.3 581,194 - GFF1902 0.70 +0.7 581,194 - GFF1902 0.70 -0.3 581,194 - GFF1902 0.70 +0.1 581,194 - GFF1902 0.70 +0.1 581,334 + GFF1902 0.77 +0.1 581,335 - GFF1902 0.77 +1.7 581,376 + GFF1902 0.78 +3.7 581,376 + GFF1902 0.78 -0.5 581,377 - GFF1902 0.78 -0.5 581,377 - GFF1902 0.78 -0.2 581,412 + GFF1902 0.80 +0.7 581,412 + GFF1902 0.80 +0.0 581,412 + GFF1902 0.80 +0.2 581,412 + GFF1902 0.80 -0.5 581,412 + GFF1902 0.80 +1.0 581,413 - GFF1902 0.80 -0.7 581,413 - GFF1902 0.80 +0.2 581,560 + GFF1902 0.87 -0.4 581,995 - +1.5 581,995 - -0.4 581,995 - +0.5 582,075 + -0.8 582,076 - -1.1 582,076 - -0.0 582,285 + +0.7 582,285 + +0.5 582,285 + -0.2 582,285 + +0.0 582,285 + -0.7 582,286 - -1.2 582,286 - +1.1 582,286 - -0.7 582,286 - -0.6 582,286 - -1.3 582,286 - +0.1 582,287 + +0.0 582,287 + -0.7 582,288 - -0.3 582,288 - +0.1 582,288 - +0.4 582,298 + -0.3 582,420 + GFF1903 0.12 -0.2 582,421 - GFF1903 0.12 -0.9 582,441 + GFF1903 0.13 -0.1 582,609 + GFF1903 0.19 +0.1 582,705 + GFF1903 0.23 +0.1 582,705 + GFF1903 0.23 -0.7 582,705 + GFF1903 0.23 +0.8 582,705 + GFF1903 0.23 +0.3 582,705 + GFF1903 0.23 -0.9 582,706 - GFF1903 0.23 -2.3 582,717 + GFF1903 0.23 -0.1 582,717 + GFF1903 0.23 -1.1 582,717 + GFF1903 0.23 +0.1 582,717 + GFF1903 0.23 +1.3 582,717 + GFF1903 0.23 -0.7 582,717 + GFF1903 0.23 -0.1 582,717 + GFF1903 0.23 +0.3 582,717 + GFF1903 0.23 -1.1 582,718 - GFF1903 0.23 -2.4 582,718 - GFF1903 0.23 -0.4 582,718 - GFF1903 0.23 -0.3 582,742 - GFF1903 0.24 -0.0 582,742 - GFF1903 0.24 +1.4 582,742 - GFF1903 0.24 +0.7
Or see this region's nucleotide sequence