Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1835 and GFF1836 are separated by 14 nucleotides GFF1836 and GFF1837 are separated by 107 nucleotides
GFF1835 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 500,825 to 502,441
GFF1835
GFF1836 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 502,456 to 504,585
GFF1836
GFF1837 - Transcriptional regulator, LysR family, at 504,693 to 505,607
GFF1837
Position (kb) 502
503
504
505 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 502.278 kb on + strand, within GFF1835 at 502.279 kb on - strand, within GFF1835 at 502.281 kb on + strand at 502.281 kb on + strand at 502.281 kb on + strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.736 kb on + strand, within GFF1836 at 502.737 kb on - strand, within GFF1836 at 502.737 kb on - strand, within GFF1836 at 502.904 kb on + strand, within GFF1836 at 502.905 kb on - strand, within GFF1836 at 502.905 kb on - strand, within GFF1836 at 503.064 kb on - strand, within GFF1836 at 503.229 kb on - strand, within GFF1836 at 503.492 kb on + strand, within GFF1836 at 503.492 kb on + strand, within GFF1836 at 503.492 kb on + strand, within GFF1836 at 503.631 kb on - strand, within GFF1836 at 503.631 kb on - strand, within GFF1836 at 503.631 kb on - strand, within GFF1836 at 503.712 kb on - strand, within GFF1836 at 503.801 kb on + strand, within GFF1836 at 503.801 kb on + strand, within GFF1836 at 503.802 kb on - strand, within GFF1836 at 503.963 kb on + strand, within GFF1836 at 503.963 kb on + strand, within GFF1836 at 503.964 kb on - strand, within GFF1836 at 503.964 kb on - strand, within GFF1836 at 503.964 kb on - strand, within GFF1836 at 504.189 kb on - strand, within GFF1836 at 504.230 kb on + strand, within GFF1836 at 504.230 kb on + strand, within GFF1836 at 504.434 kb on + strand at 504.435 kb on - strand at 504.435 kb on - strand at 504.435 kb on - strand at 504.435 kb on - strand at 504.435 kb on - strand at 504.488 kb on + strand at 504.500 kb on + strand at 504.501 kb on - strand at 504.501 kb on - strand at 504.611 kb on + strand at 504.672 kb on - strand at 505.209 kb on + strand, within GFF1837 at 505.209 kb on + strand, within GFF1837 at 505.210 kb on - strand, within GFF1837 at 505.210 kb on - strand, within GFF1837 at 505.210 kb on - strand, within GFF1837 at 505.210 kb on - strand, within GFF1837 at 505.296 kb on + strand, within GFF1837 at 505.296 kb on + strand, within GFF1837 at 505.297 kb on - strand, within GFF1837 at 505.297 kb on - strand, within GFF1837
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 502,278 + GFF1835 0.90 -0.3 502,279 - GFF1835 0.90 +0.5 502,281 + -1.3 502,281 + +0.3 502,281 + -0.3 502,282 - -0.3 502,282 - +0.2 502,282 - -1.3 502,282 - -0.3 502,282 - -1.9 502,282 - -1.1 502,282 - +0.0 502,736 + GFF1836 0.13 +0.7 502,737 - GFF1836 0.13 -0.3 502,737 - GFF1836 0.13 -0.2 502,904 + GFF1836 0.21 -0.5 502,905 - GFF1836 0.21 +1.5 502,905 - GFF1836 0.21 +0.4 503,064 - GFF1836 0.29 +1.9 503,229 - GFF1836 0.36 -0.7 503,492 + GFF1836 0.49 -0.3 503,492 + GFF1836 0.49 -0.3 503,492 + GFF1836 0.49 -1.5 503,631 - GFF1836 0.55 +4.0 503,631 - GFF1836 0.55 -0.8 503,631 - GFF1836 0.55 -0.4 503,712 - GFF1836 0.59 -0.2 503,801 + GFF1836 0.63 +0.1 503,801 + GFF1836 0.63 -0.3 503,802 - GFF1836 0.63 -0.2 503,963 + GFF1836 0.71 +0.3 503,963 + GFF1836 0.71 -0.2 503,964 - GFF1836 0.71 -0.2 503,964 - GFF1836 0.71 +0.9 503,964 - GFF1836 0.71 +0.5 504,189 - GFF1836 0.81 +0.3 504,230 + GFF1836 0.83 -0.7 504,230 + GFF1836 0.83 -0.1 504,434 + +0.9 504,435 - -0.3 504,435 - +0.1 504,435 - -0.4 504,435 - +0.3 504,435 - -0.3 504,488 + -2.0 504,500 + -0.3 504,501 - +2.5 504,501 - -0.7 504,611 + +2.0 504,672 - -1.1 505,209 + GFF1837 0.56 -0.5 505,209 + GFF1837 0.56 -0.7 505,210 - GFF1837 0.57 -0.9 505,210 - GFF1837 0.57 +0.4 505,210 - GFF1837 0.57 +0.6 505,210 - GFF1837 0.57 -0.7 505,296 + GFF1837 0.66 +0.1 505,296 + GFF1837 0.66 -1.2 505,297 - GFF1837 0.66 -0.5 505,297 - GFF1837 0.66 -1.1
Or see this region's nucleotide sequence