Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1834 and GFF1835 are separated by 42 nucleotides GFF1835 and GFF1836 are separated by 14 nucleotides
GFF1834 - BUG/TctC family periplasmic protein, at 499,796 to 500,782
GFF1834
GFF1835 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 500,825 to 502,441
GFF1835
GFF1836 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 502,456 to 504,585
GFF1836
Position (kb) 500
501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2 at 500.004 kb on + strand, within GFF1834 at 500.005 kb on - strand, within GFF1834 at 500.164 kb on - strand, within GFF1834 at 500.219 kb on + strand, within GFF1834 at 500.220 kb on - strand, within GFF1834 at 500.220 kb on - strand, within GFF1834 at 500.455 kb on - strand, within GFF1834 at 500.506 kb on - strand, within GFF1834 at 501.390 kb on + strand, within GFF1835 at 501.391 kb on - strand, within GFF1835 at 501.391 kb on - strand, within GFF1835 at 501.391 kb on - strand, within GFF1835 at 502.278 kb on + strand, within GFF1835 at 502.279 kb on - strand, within GFF1835 at 502.281 kb on + strand at 502.281 kb on + strand at 502.281 kb on + strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.282 kb on - strand at 502.736 kb on + strand, within GFF1836 at 502.737 kb on - strand, within GFF1836 at 502.737 kb on - strand, within GFF1836 at 502.904 kb on + strand, within GFF1836 at 502.905 kb on - strand, within GFF1836 at 502.905 kb on - strand, within GFF1836 at 503.064 kb on - strand, within GFF1836 at 503.229 kb on - strand, within GFF1836
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 500,004 + GFF1834 0.21 -0.0 500,005 - GFF1834 0.21 -0.2 500,164 - GFF1834 0.37 -0.0 500,219 + GFF1834 0.43 +1.1 500,220 - GFF1834 0.43 +0.6 500,220 - GFF1834 0.43 -0.3 500,455 - GFF1834 0.67 -0.0 500,506 - GFF1834 0.72 -0.5 501,390 + GFF1835 0.35 -0.6 501,391 - GFF1835 0.35 -0.8 501,391 - GFF1835 0.35 -0.1 501,391 - GFF1835 0.35 -0.4 502,278 + GFF1835 0.90 -0.3 502,279 - GFF1835 0.90 +0.5 502,281 + -1.3 502,281 + +0.3 502,281 + -0.3 502,282 - -0.3 502,282 - +0.2 502,282 - -1.3 502,282 - -0.3 502,282 - -1.9 502,282 - -1.1 502,282 - +0.0 502,736 + GFF1836 0.13 +0.7 502,737 - GFF1836 0.13 -0.3 502,737 - GFF1836 0.13 -0.2 502,904 + GFF1836 0.21 -0.5 502,905 - GFF1836 0.21 +1.5 502,905 - GFF1836 0.21 +0.4 503,064 - GFF1836 0.29 +1.9 503,229 - GFF1836 0.36 -0.7
Or see this region's nucleotide sequence