Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1826 and GFF1827 are separated by 464 nucleotides GFF1827 and GFF1828 are separated by 3 nucleotides GFF1828 and GFF1829 are separated by 112 nucleotides GFF1829 and GFF1830 overlap by 1 nucleotides
GFF1826 - hypothetical protein, at 492,095 to 492,298
GFF1826
GFF1827 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 492,763 to 493,170
GFF1827
GFF1828 - phosphodiesterase I, at 493,174 to 495,015
GFF1828
GFF1829 - 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23), at 495,128 to 495,556
GFF1829
GFF1830 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 495,556 to 496,857
GFF1830
Position (kb) 493
494
495
496 Strain fitness (log2 ratio) -2
-1
0
1 at 492.463 kb on - strand at 492.606 kb on + strand at 492.606 kb on + strand at 492.625 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.713 kb on - strand at 492.713 kb on - strand at 492.713 kb on - strand at 492.714 kb on + strand at 492.715 kb on - strand at 492.715 kb on - strand at 493.175 kb on + strand at 493.175 kb on + strand at 493.175 kb on + strand at 493.334 kb on + strand at 493.335 kb on - strand at 493.339 kb on - strand at 493.457 kb on + strand, within GFF1828 at 493.457 kb on + strand, within GFF1828 at 493.457 kb on + strand, within GFF1828 at 493.458 kb on - strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.464 kb on - strand, within GFF1828 at 493.464 kb on - strand, within GFF1828 at 493.616 kb on + strand, within GFF1828 at 493.676 kb on + strand, within GFF1828 at 493.676 kb on + strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.688 kb on + strand, within GFF1828 at 493.688 kb on + strand, within GFF1828 at 493.892 kb on + strand, within GFF1828 at 493.982 kb on + strand, within GFF1828 at 494.040 kb on - strand, within GFF1828 at 494.057 kb on + strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.108 kb on + strand, within GFF1828 at 494.108 kb on + strand, within GFF1828 at 494.109 kb on - strand, within GFF1828 at 494.171 kb on + strand, within GFF1828 at 494.172 kb on - strand, within GFF1828 at 494.172 kb on - strand, within GFF1828 at 494.277 kb on - strand, within GFF1828 at 494.285 kb on + strand, within GFF1828 at 494.286 kb on - strand, within GFF1828 at 494.318 kb on + strand, within GFF1828 at 494.319 kb on - strand, within GFF1828 at 494.319 kb on - strand, within GFF1828 at 494.417 kb on + strand, within GFF1828 at 494.418 kb on - strand, within GFF1828 at 494.418 kb on - strand, within GFF1828 at 494.847 kb on - strand at 494.904 kb on + strand at 494.905 kb on - strand at 494.979 kb on - strand at 494.979 kb on - strand at 495.256 kb on - strand, within GFF1829 at 495.322 kb on - strand, within GFF1829 at 495.869 kb on + strand, within GFF1830
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 492,463 - -1.8 492,606 + -0.3 492,606 + +1.0 492,625 + +0.0 492,712 + +0.4 492,712 + -0.7 492,712 + -0.3 492,712 + -2.2 492,713 - -0.7 492,713 - -0.3 492,713 - -0.6 492,714 + +0.1 492,715 - +0.7 492,715 - +0.1 493,175 + -1.1 493,175 + +0.7 493,175 + -0.7 493,334 + -0.1 493,335 - -0.3 493,339 - +1.5 493,457 + GFF1828 0.15 -0.6 493,457 + GFF1828 0.15 +1.5 493,457 + GFF1828 0.15 -0.5 493,458 - GFF1828 0.15 -0.7 493,463 + GFF1828 0.16 -0.3 493,463 + GFF1828 0.16 +0.1 493,463 + GFF1828 0.16 -0.9 493,464 - GFF1828 0.16 -0.4 493,464 - GFF1828 0.16 -1.7 493,616 + GFF1828 0.24 -1.1 493,676 + GFF1828 0.27 -0.7 493,676 + GFF1828 0.27 +1.0 493,677 - GFF1828 0.27 +0.4 493,677 - GFF1828 0.27 -1.5 493,677 - GFF1828 0.27 +0.1 493,677 - GFF1828 0.27 -0.5 493,677 - GFF1828 0.27 -0.1 493,677 - GFF1828 0.27 -0.1 493,677 - GFF1828 0.27 +0.7 493,688 + GFF1828 0.28 -0.7 493,688 + GFF1828 0.28 +0.1 493,892 + GFF1828 0.39 -1.2 493,982 + GFF1828 0.44 -1.3 494,040 - GFF1828 0.47 -0.0 494,057 + GFF1828 0.48 +0.4 494,058 - GFF1828 0.48 -1.6 494,058 - GFF1828 0.48 +0.2 494,058 - GFF1828 0.48 -0.5 494,108 + GFF1828 0.51 -0.0 494,108 + GFF1828 0.51 -1.5 494,109 - GFF1828 0.51 -0.9 494,171 + GFF1828 0.54 +0.0 494,172 - GFF1828 0.54 +0.3 494,172 - GFF1828 0.54 -0.9 494,277 - GFF1828 0.60 -0.0 494,285 + GFF1828 0.60 -0.3 494,286 - GFF1828 0.60 -0.4 494,318 + GFF1828 0.62 +0.1 494,319 - GFF1828 0.62 +0.5 494,319 - GFF1828 0.62 -0.6 494,417 + GFF1828 0.67 +1.7 494,418 - GFF1828 0.68 -0.6 494,418 - GFF1828 0.68 -0.5 494,847 - -0.9 494,904 + -0.4 494,905 - -0.4 494,979 - +1.5 494,979 - +0.4 495,256 - GFF1829 0.30 -0.1 495,322 - GFF1829 0.45 +0.1 495,869 + GFF1830 0.24 -0.6
Or see this region's nucleotide sequence