Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1820 and GFF1821 are separated by 75 nucleotides GFF1821 and GFF1822 are separated by 162 nucleotides
GFF1820 - FIG137887: membrane protein related to purine degradation, at 483,460 to 484,671
GFF1820
GFF1821 - D-glycerate 2-kinase (EC 2.7.1.165), at 484,747 to 486,087
GFF1821
GFF1822 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 486,250 to 487,692
GFF1822
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 483.763 kb on + strand, within GFF1820 at 483.763 kb on + strand, within GFF1820 at 483.763 kb on + strand, within GFF1820 at 483.764 kb on - strand, within GFF1820 at 483.764 kb on - strand, within GFF1820 at 483.764 kb on - strand, within GFF1820 at 483.764 kb on - strand, within GFF1820 at 483.764 kb on - strand, within GFF1820 at 483.784 kb on + strand, within GFF1820 at 483.785 kb on - strand, within GFF1820 at 483.785 kb on - strand, within GFF1820 at 483.785 kb on - strand, within GFF1820 at 483.871 kb on + strand, within GFF1820 at 483.871 kb on + strand, within GFF1820 at 483.872 kb on - strand, within GFF1820 at 483.872 kb on - strand, within GFF1820 at 483.872 kb on - strand, within GFF1820 at 484.156 kb on + strand, within GFF1820 at 484.156 kb on + strand, within GFF1820 at 484.156 kb on + strand, within GFF1820 at 484.156 kb on + strand, within GFF1820 at 484.156 kb on + strand, within GFF1820 at 484.156 kb on + strand, within GFF1820 at 484.157 kb on - strand, within GFF1820 at 484.157 kb on - strand, within GFF1820 at 484.157 kb on - strand, within GFF1820 at 484.199 kb on - strand, within GFF1820 at 484.199 kb on - strand, within GFF1820 at 484.199 kb on - strand, within GFF1820 at 484.210 kb on + strand, within GFF1820 at 484.211 kb on - strand, within GFF1820 at 484.222 kb on + strand, within GFF1820 at 484.222 kb on + strand, within GFF1820 at 484.222 kb on + strand, within GFF1820 at 484.222 kb on + strand, within GFF1820 at 484.222 kb on + strand, within GFF1820 at 484.223 kb on - strand, within GFF1820 at 484.223 kb on - strand, within GFF1820 at 484.223 kb on - strand, within GFF1820 at 484.223 kb on - strand, within GFF1820 at 484.223 kb on - strand, within GFF1820 at 484.223 kb on - strand, within GFF1820 at 484.223 kb on - strand, within GFF1820 at 484.331 kb on - strand, within GFF1820 at 484.331 kb on - strand, within GFF1820 at 484.331 kb on - strand, within GFF1820 at 484.555 kb on + strand at 484.555 kb on + strand at 484.555 kb on + strand at 484.556 kb on - strand at 484.669 kb on + strand at 484.669 kb on + strand at 484.669 kb on + strand at 484.669 kb on + strand at 484.670 kb on - strand at 484.823 kb on - strand at 484.999 kb on + strand, within GFF1821 at 484.999 kb on + strand, within GFF1821 at 485.000 kb on - strand, within GFF1821 at 485.453 kb on - strand, within GFF1821 at 485.453 kb on - strand, within GFF1821 at 485.977 kb on + strand at 485.977 kb on + strand at 485.977 kb on + strand at 485.977 kb on + strand at 485.977 kb on + strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.978 kb on - strand at 485.998 kb on + strand at 485.998 kb on + strand at 485.998 kb on + strand at 485.998 kb on + strand at 485.998 kb on + strand at 485.999 kb on - strand at 485.999 kb on - strand at 485.999 kb on - strand at 485.999 kb on - strand at 486.004 kb on + strand at 486.004 kb on + strand at 486.004 kb on + strand at 486.005 kb on - strand at 486.005 kb on - strand at 486.086 kb on - strand at 486.133 kb on - strand at 486.137 kb on + strand at 486.137 kb on + strand at 486.137 kb on + strand at 486.138 kb on - strand at 486.138 kb on - strand at 486.138 kb on - strand at 486.138 kb on - strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.262 kb on + strand at 486.263 kb on - strand at 486.263 kb on - strand at 486.619 kb on + strand, within GFF1822 at 486.896 kb on - strand, within GFF1822 at 486.896 kb on - strand, within GFF1822 at 486.896 kb on - strand, within GFF1822 at 486.896 kb on - strand, within GFF1822
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 483,763 + GFF1820 0.25 +0.7 483,763 + GFF1820 0.25 -0.3 483,763 + GFF1820 0.25 -1.2 483,764 - GFF1820 0.25 -1.1 483,764 - GFF1820 0.25 -0.1 483,764 - GFF1820 0.25 +1.1 483,764 - GFF1820 0.25 -0.7 483,764 - GFF1820 0.25 -0.1 483,784 + GFF1820 0.27 +0.3 483,785 - GFF1820 0.27 -0.7 483,785 - GFF1820 0.27 -0.3 483,785 - GFF1820 0.27 +0.3 483,871 + GFF1820 0.34 +0.3 483,871 + GFF1820 0.34 -0.9 483,872 - GFF1820 0.34 +0.0 483,872 - GFF1820 0.34 +0.4 483,872 - GFF1820 0.34 +0.0 484,156 + GFF1820 0.57 -0.6 484,156 + GFF1820 0.57 +0.5 484,156 + GFF1820 0.57 -0.2 484,156 + GFF1820 0.57 +0.5 484,156 + GFF1820 0.57 -0.1 484,156 + GFF1820 0.57 -0.2 484,157 - GFF1820 0.58 +0.9 484,157 - GFF1820 0.58 -0.0 484,157 - GFF1820 0.58 +0.0 484,199 - GFF1820 0.61 +0.4 484,199 - GFF1820 0.61 -0.6 484,199 - GFF1820 0.61 -1.1 484,210 + GFF1820 0.62 +0.7 484,211 - GFF1820 0.62 -1.0 484,222 + GFF1820 0.63 +0.2 484,222 + GFF1820 0.63 -0.7 484,222 + GFF1820 0.63 -0.5 484,222 + GFF1820 0.63 -0.1 484,222 + GFF1820 0.63 -1.3 484,223 - GFF1820 0.63 +0.3 484,223 - GFF1820 0.63 +0.2 484,223 - GFF1820 0.63 -1.7 484,223 - GFF1820 0.63 -0.8 484,223 - GFF1820 0.63 +0.0 484,223 - GFF1820 0.63 +0.1 484,223 - GFF1820 0.63 -0.5 484,331 - GFF1820 0.72 +0.3 484,331 - GFF1820 0.72 -0.6 484,331 - GFF1820 0.72 -0.9 484,555 + +0.1 484,555 + +0.1 484,555 + -0.9 484,556 - +0.3 484,669 + +0.7 484,669 + +0.0 484,669 + +0.4 484,669 + -0.2 484,670 - -0.5 484,823 - +0.1 484,999 + GFF1821 0.19 -0.8 484,999 + GFF1821 0.19 -0.2 485,000 - GFF1821 0.19 +0.3 485,453 - GFF1821 0.53 -0.4 485,453 - GFF1821 0.53 -2.0 485,977 + +0.6 485,977 + -0.2 485,977 + +0.6 485,977 + -0.4 485,977 + -0.6 485,978 - +0.4 485,978 - +0.7 485,978 - -0.0 485,978 - -0.0 485,978 - +0.4 485,978 - -2.7 485,998 + -0.0 485,998 + +0.3 485,998 + +0.3 485,998 + +0.0 485,998 + -0.2 485,999 - -0.4 485,999 - -0.5 485,999 - -0.2 485,999 - -0.5 486,004 + -0.0 486,004 + +0.1 486,004 + -1.4 486,005 - -1.5 486,005 - -0.9 486,086 - -0.4 486,133 - -2.9 486,137 + -0.5 486,137 + -0.1 486,137 + +1.1 486,138 - +1.2 486,138 - -0.7 486,138 - -0.6 486,138 - -0.3 486,262 + -1.5 486,262 + -0.0 486,262 + -1.0 486,262 + -0.5 486,262 + -2.3 486,262 + -0.1 486,262 + -0.4 486,263 - -0.3 486,263 - -0.6 486,619 + GFF1822 0.26 +0.1 486,896 - GFF1822 0.45 -2.0 486,896 - GFF1822 0.45 -0.7 486,896 - GFF1822 0.45 +0.4 486,896 - GFF1822 0.45 -0.6
Or see this region's nucleotide sequence