Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1811 and GFF1812 overlap by 4 nucleotides GFF1812 and GFF1813 are separated by 36 nucleotides GFF1813 and GFF1814 are separated by 17 nucleotides
GFF1811 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 474,752 to 476,101
GFF1811
GFF1812 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 476,098 to 476,751
GFF1812
GFF1813 - Acetylornithine deacetylase-like protein Acry_1162, at 476,788 to 478,014
GFF1813
GFF1814 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) decarboxylase (EC 4.1.1.97) / Allantoate amidohydrolase (EC 3.5.3.9), at 478,032 to 479,810
GFF1814
Position (kb) 476
477
478
479 Strain fitness (log2 ratio) -1
0
1
2
3 at 475.826 kb on + strand, within GFF1811 at 475.917 kb on - strand, within GFF1811 at 475.917 kb on - strand, within GFF1811 at 475.917 kb on - strand, within GFF1811 at 475.917 kb on - strand, within GFF1811 at 476.048 kb on + strand at 476.048 kb on + strand at 476.049 kb on - strand at 476.429 kb on - strand, within GFF1812 at 476.429 kb on - strand, within GFF1812 at 476.429 kb on - strand, within GFF1812 at 476.429 kb on - strand, within GFF1812 at 476.458 kb on + strand, within GFF1812 at 476.458 kb on + strand, within GFF1812 at 476.458 kb on + strand, within GFF1812 at 476.459 kb on - strand, within GFF1812 at 476.648 kb on - strand, within GFF1812 at 476.852 kb on - strand at 476.912 kb on + strand, within GFF1813 at 476.912 kb on + strand, within GFF1813 at 476.913 kb on - strand, within GFF1813 at 476.942 kb on + strand, within GFF1813 at 476.942 kb on + strand, within GFF1813 at 476.943 kb on - strand, within GFF1813 at 476.943 kb on - strand, within GFF1813 at 476.943 kb on - strand, within GFF1813 at 476.960 kb on + strand, within GFF1813 at 476.960 kb on + strand, within GFF1813 at 476.960 kb on + strand, within GFF1813 at 476.960 kb on + strand, within GFF1813 at 477.302 kb on + strand, within GFF1813 at 477.302 kb on + strand, within GFF1813 at 477.303 kb on - strand, within GFF1813 at 477.320 kb on + strand, within GFF1813 at 477.320 kb on + strand, within GFF1813 at 477.320 kb on + strand, within GFF1813 at 477.321 kb on - strand, within GFF1813 at 477.321 kb on - strand, within GFF1813 at 477.321 kb on - strand, within GFF1813 at 477.452 kb on + strand, within GFF1813 at 477.452 kb on + strand, within GFF1813 at 477.453 kb on - strand, within GFF1813 at 477.453 kb on - strand, within GFF1813 at 477.545 kb on + strand, within GFF1813 at 477.545 kb on + strand, within GFF1813 at 477.545 kb on + strand, within GFF1813 at 477.690 kb on - strand, within GFF1813 at 477.770 kb on + strand, within GFF1813 at 477.813 kb on - strand, within GFF1813 at 477.813 kb on - strand, within GFF1813 at 477.813 kb on - strand, within GFF1813 at 478.004 kb on + strand at 478.004 kb on + strand at 478.531 kb on + strand, within GFF1814 at 478.532 kb on - strand, within GFF1814 at 478.628 kb on - strand, within GFF1814 at 478.628 kb on - strand, within GFF1814 at 478.703 kb on + strand, within GFF1814 at 478.703 kb on + strand, within GFF1814 at 478.704 kb on - strand, within GFF1814 at 478.704 kb on - strand, within GFF1814 at 478.885 kb on + strand, within GFF1814 at 478.885 kb on + strand, within GFF1814 at 478.886 kb on - strand, within GFF1814 at 479.005 kb on + strand, within GFF1814 at 479.005 kb on + strand, within GFF1814 at 479.006 kb on - strand, within GFF1814
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 475,826 + GFF1811 0.80 -0.7 475,917 - GFF1811 0.86 -0.1 475,917 - GFF1811 0.86 +0.5 475,917 - GFF1811 0.86 -0.4 475,917 - GFF1811 0.86 +0.1 476,048 + +0.4 476,048 + +0.7 476,049 - -1.0 476,429 - GFF1812 0.51 -0.4 476,429 - GFF1812 0.51 +0.1 476,429 - GFF1812 0.51 -0.1 476,429 - GFF1812 0.51 -0.5 476,458 + GFF1812 0.55 +0.1 476,458 + GFF1812 0.55 +0.0 476,458 + GFF1812 0.55 -0.1 476,459 - GFF1812 0.55 -0.7 476,648 - GFF1812 0.84 -0.3 476,852 - -1.1 476,912 + GFF1813 0.10 +0.1 476,912 + GFF1813 0.10 -1.7 476,913 - GFF1813 0.10 -1.4 476,942 + GFF1813 0.13 -0.1 476,942 + GFF1813 0.13 +0.6 476,943 - GFF1813 0.13 -0.6 476,943 - GFF1813 0.13 -0.4 476,943 - GFF1813 0.13 -1.7 476,960 + GFF1813 0.14 -0.3 476,960 + GFF1813 0.14 -0.0 476,960 + GFF1813 0.14 +0.7 476,960 + GFF1813 0.14 -0.7 477,302 + GFF1813 0.42 -0.5 477,302 + GFF1813 0.42 -0.3 477,303 - GFF1813 0.42 -0.4 477,320 + GFF1813 0.43 +0.4 477,320 + GFF1813 0.43 +3.3 477,320 + GFF1813 0.43 -1.6 477,321 - GFF1813 0.43 +1.3 477,321 - GFF1813 0.43 -0.9 477,321 - GFF1813 0.43 +0.3 477,452 + GFF1813 0.54 -1.2 477,452 + GFF1813 0.54 -0.7 477,453 - GFF1813 0.54 -0.0 477,453 - GFF1813 0.54 -1.7 477,545 + GFF1813 0.62 +0.2 477,545 + GFF1813 0.62 -0.4 477,545 + GFF1813 0.62 -0.6 477,690 - GFF1813 0.74 -0.3 477,770 + GFF1813 0.80 +0.0 477,813 - GFF1813 0.84 -0.3 477,813 - GFF1813 0.84 +1.0 477,813 - GFF1813 0.84 -0.4 478,004 + -0.4 478,004 + -0.4 478,531 + GFF1814 0.28 +0.6 478,532 - GFF1814 0.28 -0.4 478,628 - GFF1814 0.34 -0.9 478,628 - GFF1814 0.34 +1.7 478,703 + GFF1814 0.38 +1.5 478,703 + GFF1814 0.38 +0.3 478,704 - GFF1814 0.38 +0.1 478,704 - GFF1814 0.38 +0.7 478,885 + GFF1814 0.48 +0.2 478,885 + GFF1814 0.48 +0.7 478,886 - GFF1814 0.48 +0.1 479,005 + GFF1814 0.55 +0.1 479,005 + GFF1814 0.55 +0.1 479,006 - GFF1814 0.55 +0.1
Or see this region's nucleotide sequence