Strain Fitness in Variovorax sp. SCN45 around GFF1797

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1796 and GFF1797 are separated by 217 nucleotidesGFF1797 and GFF1798 are separated by 63 nucleotidesGFF1798 and GFF1799 are separated by 23 nucleotides GFF1796 - NADP-dependent malic enzyme (EC 1.1.1.40), at 456,883 to 459,186 GFF1796 GFF1797 - FIG022199: FAD-binding protein, at 459,404 to 460,741 GFF1797 GFF1798 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 460,805 to 461,713 GFF1798 GFF1799 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 461,737 to 462,522 GFF1799 Position (kb) 459 460 461Strain fitness (log2 ratio) -2 -1 0 1 2at 458.447 kb on + strand, within GFF1796at 458.447 kb on + strand, within GFF1796at 458.489 kb on + strand, within GFF1796at 458.489 kb on + strand, within GFF1796at 458.490 kb on - strand, within GFF1796at 458.490 kb on - strand, within GFF1796at 458.490 kb on - strand, within GFF1796at 458.516 kb on + strand, within GFF1796at 458.516 kb on + strand, within GFF1796at 458.516 kb on + strand, within GFF1796at 458.516 kb on + strand, within GFF1796at 458.516 kb on + strand, within GFF1796at 458.517 kb on - strand, within GFF1796at 458.517 kb on - strand, within GFF1796at 458.517 kb on - strand, within GFF1796at 458.517 kb on - strand, within GFF1796at 458.517 kb on - strand, within GFF1796at 458.517 kb on - strand, within GFF1796at 458.732 kb on + strand, within GFF1796at 458.732 kb on + strand, within GFF1796at 458.733 kb on - strand, within GFF1796at 458.733 kb on - strand, within GFF1796at 458.733 kb on - strand, within GFF1796at 458.733 kb on - strand, within GFF1796at 458.733 kb on - strand, within GFF1796at 458.733 kb on - strand, within GFF1796at 459.032 kb on + strandat 459.033 kb on - strandat 459.244 kb on + strandat 459.244 kb on + strandat 459.276 kb on + strandat 459.277 kb on - strandat 459.291 kb on - strandat 459.312 kb on + strandat 459.313 kb on - strandat 459.329 kb on - strandat 459.332 kb on + strandat 459.332 kb on + strandat 459.332 kb on + strandat 459.332 kb on + strandat 459.333 kb on - strandat 459.338 kb on + strandat 459.339 kb on - strandat 459.339 kb on - strandat 459.403 kb on + strandat 459.404 kb on - strandat 459.404 kb on - strandat 459.404 kb on - strandat 459.404 kb on - strandat 459.404 kb on - strandat 459.404 kb on - strandat 459.404 kb on - strandat 459.404 kb on - strandat 459.716 kb on + strand, within GFF1797at 459.998 kb on + strand, within GFF1797at 459.999 kb on - strand, within GFF1797at 460.085 kb on + strand, within GFF1797at 460.086 kb on - strand, within GFF1797at 460.086 kb on - strand, within GFF1797at 460.086 kb on - strand, within GFF1797at 460.086 kb on - strand, within GFF1797at 460.086 kb on - strand, within GFF1797at 460.139 kb on + strand, within GFF1797at 460.140 kb on - strand, within GFF1797at 460.181 kb on + strand, within GFF1797at 460.262 kb on + strand, within GFF1797at 460.262 kb on + strand, within GFF1797at 460.262 kb on + strand, within GFF1797at 460.262 kb on + strand, within GFF1797at 460.263 kb on - strand, within GFF1797at 460.263 kb on - strand, within GFF1797at 460.263 kb on - strand, within GFF1797at 460.263 kb on - strand, within GFF1797at 460.268 kb on + strand, within GFF1797at 460.319 kb on + strand, within GFF1797at 460.319 kb on + strand, within GFF1797at 460.320 kb on - strand, within GFF1797at 460.355 kb on + strand, within GFF1797at 460.355 kb on + strand, within GFF1797at 460.355 kb on + strand, within GFF1797at 460.355 kb on + strand, within GFF1797at 460.355 kb on + strand, within GFF1797at 460.355 kb on + strand, within GFF1797at 460.355 kb on + strand, within GFF1797at 460.356 kb on - strand, within GFF1797at 460.356 kb on - strand, within GFF1797at 460.356 kb on - strand, within GFF1797at 460.356 kb on - strand, within GFF1797at 460.356 kb on - strand, within GFF1797at 460.356 kb on - strand, within GFF1797at 460.496 kb on + strand, within GFF1797at 460.496 kb on + strand, within GFF1797at 460.643 kb on + strandat 460.643 kb on + strandat 460.643 kb on + strandat 460.643 kb on + strandat 460.643 kb on + strandat 460.643 kb on + strandat 460.643 kb on + strandat 460.643 kb on + strandat 460.643 kb on + strandat 460.644 kb on - strandat 460.644 kb on - strandat 460.646 kb on + strandat 460.646 kb on + strandat 460.646 kb on + strandat 460.647 kb on - strandat 460.647 kb on - strandat 460.647 kb on - strandat 460.647 kb on - strandat 460.647 kb on - strandat 460.878 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
458,447 + GFF1796 0.68 -1.0
458,447 + GFF1796 0.68 -0.7
458,489 + GFF1796 0.70 -0.7
458,489 + GFF1796 0.70 +0.0
458,490 - GFF1796 0.70 -0.9
458,490 - GFF1796 0.70 -1.9
458,490 - GFF1796 0.70 -1.1
458,516 + GFF1796 0.71 +0.7
458,516 + GFF1796 0.71 -0.1
458,516 + GFF1796 0.71 -0.0
458,516 + GFF1796 0.71 +1.0
458,516 + GFF1796 0.71 -1.2
458,517 - GFF1796 0.71 -0.6
458,517 - GFF1796 0.71 -0.4
458,517 - GFF1796 0.71 -0.3
458,517 - GFF1796 0.71 -0.3
458,517 - GFF1796 0.71 -0.8
458,517 - GFF1796 0.71 -0.5
458,732 + GFF1796 0.80 +1.9
458,732 + GFF1796 0.80 -0.6
458,733 - GFF1796 0.80 -0.2
458,733 - GFF1796 0.80 -0.4
458,733 - GFF1796 0.80 +0.1
458,733 - GFF1796 0.80 -1.3
458,733 - GFF1796 0.80 +0.6
458,733 - GFF1796 0.80 +1.5
459,032 + -0.5
459,033 - +0.3
459,244 + -0.8
459,244 + -0.4
459,276 + -0.8
459,277 - -0.3
459,291 - +0.1
459,312 + -0.3
459,313 - -0.4
459,329 - +0.0
459,332 + -0.3
459,332 + -0.6
459,332 + -0.2
459,332 + -0.7
459,333 - -0.9
459,338 + -1.3
459,339 - +0.2
459,339 - -0.0
459,403 + +0.2
459,404 - -0.8
459,404 - +0.1
459,404 - -0.2
459,404 - -0.6
459,404 - +0.4
459,404 - -0.9
459,404 - +1.0
459,404 - +0.6
459,716 + GFF1797 0.23 -0.1
459,998 + GFF1797 0.44 -0.9
459,999 - GFF1797 0.44 -0.6
460,085 + GFF1797 0.51 +1.1
460,086 - GFF1797 0.51 -0.3
460,086 - GFF1797 0.51 -0.6
460,086 - GFF1797 0.51 -0.4
460,086 - GFF1797 0.51 -0.4
460,086 - GFF1797 0.51 -1.4
460,139 + GFF1797 0.55 +0.1
460,140 - GFF1797 0.55 -0.1
460,181 + GFF1797 0.58 -0.9
460,262 + GFF1797 0.64 -0.7
460,262 + GFF1797 0.64 -1.1
460,262 + GFF1797 0.64 -1.1
460,262 + GFF1797 0.64 -0.7
460,263 - GFF1797 0.64 -0.7
460,263 - GFF1797 0.64 +0.4
460,263 - GFF1797 0.64 -0.2
460,263 - GFF1797 0.64 +2.7
460,268 + GFF1797 0.65 -0.4
460,319 + GFF1797 0.68 -0.4
460,319 + GFF1797 0.68 +0.5
460,320 - GFF1797 0.68 -0.4
460,355 + GFF1797 0.71 -1.1
460,355 + GFF1797 0.71 -0.3
460,355 + GFF1797 0.71 -0.2
460,355 + GFF1797 0.71 -0.1
460,355 + GFF1797 0.71 -1.0
460,355 + GFF1797 0.71 +0.7
460,355 + GFF1797 0.71 -0.9
460,356 - GFF1797 0.71 -1.1
460,356 - GFF1797 0.71 -0.1
460,356 - GFF1797 0.71 -0.9
460,356 - GFF1797 0.71 -1.2
460,356 - GFF1797 0.71 -0.9
460,356 - GFF1797 0.71 -0.2
460,496 + GFF1797 0.82 +0.3
460,496 + GFF1797 0.82 +0.4
460,643 + +0.6
460,643 + -0.3
460,643 + -0.5
460,643 + -1.6
460,643 + +1.7
460,643 + -0.3
460,643 + +0.1
460,643 + -0.4
460,643 + +0.0
460,644 - +0.4
460,644 - +0.5
460,646 + -1.1
460,646 + -0.3
460,646 + -1.4
460,647 - -0.4
460,647 - +0.7
460,647 - +0.7
460,647 - -1.6
460,647 - -1.3
460,878 + -0.5

Or see this region's nucleotide sequence