Strain Fitness in Variovorax sp. SCN45 around GFF1793

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1792 and GFF1793 are separated by 48 nucleotidesGFF1793 and GFF1794 are separated by 51 nucleotides GFF1792 - Transcriptional regulator, IclR family, at 452,320 to 453,195 GFF1792 GFF1793 - hypothetical protein, at 453,244 to 454,881 GFF1793 GFF1794 - hypothetical protein, at 454,933 to 455,994 GFF1794 Position (kb) 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 452.351 kb on + strandat 452.352 kb on - strandat 452.352 kb on - strandat 452.465 kb on + strand, within GFF1792at 452.465 kb on + strand, within GFF1792at 452.466 kb on - strand, within GFF1792at 452.466 kb on - strand, within GFF1792at 452.525 kb on + strand, within GFF1792at 452.525 kb on + strand, within GFF1792at 452.526 kb on - strand, within GFF1792at 452.526 kb on - strand, within GFF1792at 452.526 kb on - strand, within GFF1792at 452.729 kb on + strand, within GFF1792at 452.729 kb on + strand, within GFF1792at 452.729 kb on + strand, within GFF1792at 452.729 kb on + strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.801 kb on + strand, within GFF1792at 452.801 kb on + strand, within GFF1792at 452.801 kb on + strand, within GFF1792at 452.802 kb on - strand, within GFF1792at 452.802 kb on - strand, within GFF1792at 452.885 kb on + strand, within GFF1792at 452.885 kb on + strand, within GFF1792at 452.886 kb on - strand, within GFF1792at 452.886 kb on - strand, within GFF1792at 452.918 kb on + strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.123 kb on + strandat 453.123 kb on + strandat 453.123 kb on + strandat 453.123 kb on + strandat 453.123 kb on + strandat 453.123 kb on + strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.190 kb on + strandat 453.191 kb on - strandat 453.191 kb on - strandat 453.191 kb on - strandat 453.670 kb on + strand, within GFF1793at 453.670 kb on + strand, within GFF1793at 453.671 kb on - strand, within GFF1793at 453.671 kb on - strand, within GFF1793at 453.671 kb on - strand, within GFF1793at 453.911 kb on - strand, within GFF1793at 453.949 kb on + strand, within GFF1793at 453.949 kb on + strand, within GFF1793at 453.949 kb on + strand, within GFF1793at 453.950 kb on - strand, within GFF1793at 453.950 kb on - strand, within GFF1793at 453.950 kb on - strand, within GFF1793at 454.111 kb on + strand, within GFF1793at 454.153 kb on + strand, within GFF1793at 454.153 kb on + strand, within GFF1793at 454.153 kb on + strand, within GFF1793at 454.195 kb on + strand, within GFF1793at 454.195 kb on + strand, within GFF1793at 454.195 kb on + strand, within GFF1793at 454.195 kb on + strand, within GFF1793at 454.196 kb on - strand, within GFF1793at 454.196 kb on - strand, within GFF1793at 454.196 kb on - strand, within GFF1793at 454.196 kb on - strand, within GFF1793at 454.196 kb on - strand, within GFF1793at 454.338 kb on - strand, within GFF1793at 454.338 kb on - strand, within GFF1793at 454.387 kb on + strand, within GFF1793at 454.519 kb on + strand, within GFF1793at 454.519 kb on + strand, within GFF1793at 454.519 kb on + strand, within GFF1793at 454.519 kb on + strand, within GFF1793at 454.519 kb on + strand, within GFF1793at 454.520 kb on - strand, within GFF1793at 454.520 kb on - strand, within GFF1793at 454.567 kb on + strand, within GFF1793at 454.567 kb on + strand, within GFF1793at 454.567 kb on + strand, within GFF1793at 454.567 kb on + strand, within GFF1793at 454.567 kb on + strand, within GFF1793at 454.568 kb on - strand, within GFF1793at 454.568 kb on - strand, within GFF1793at 454.783 kb on - strandat 454.840 kb on + strandat 454.840 kb on + strandat 454.841 kb on - strandat 454.841 kb on - strandat 454.841 kb on - strandat 454.841 kb on - strandat 454.880 kb on - strandat 455.175 kb on + strand, within GFF1794at 455.175 kb on + strand, within GFF1794at 455.175 kb on + strand, within GFF1794at 455.377 kb on + strand, within GFF1794at 455.377 kb on + strand, within GFF1794at 455.378 kb on - strand, within GFF1794at 455.395 kb on + strand, within GFF1794at 455.395 kb on + strand, within GFF1794at 455.419 kb on + strand, within GFF1794at 455.419 kb on + strand, within GFF1794at 455.419 kb on + strand, within GFF1794at 455.419 kb on + strand, within GFF1794at 455.533 kb on + strand, within GFF1794at 455.534 kb on - strand, within GFF1794at 455.593 kb on + strand, within GFF1794at 455.594 kb on - strand, within GFF1794at 455.594 kb on - strand, within GFF1794at 455.668 kb on + strand, within GFF1794at 455.669 kb on - strand, within GFF1794at 455.755 kb on + strand, within GFF1794at 455.755 kb on + strand, within GFF1794at 455.755 kb on + strand, within GFF1794at 455.755 kb on + strand, within GFF1794at 455.755 kb on + strand, within GFF1794at 455.755 kb on + strand, within GFF1794at 455.755 kb on + strand, within GFF1794at 455.755 kb on + strand, within GFF1794at 455.756 kb on - strand, within GFF1794at 455.756 kb on - strand, within GFF1794

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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452,351 + -2.7
452,352 - -0.1
452,352 - -0.2
452,465 + GFF1792 0.17 -0.8
452,465 + GFF1792 0.17 -0.9
452,466 - GFF1792 0.17 +0.4
452,466 - GFF1792 0.17 -0.6
452,525 + GFF1792 0.23 +0.5
452,525 + GFF1792 0.23 +0.0
452,526 - GFF1792 0.24 +2.1
452,526 - GFF1792 0.24 +0.3
452,526 - GFF1792 0.24 +0.4
452,729 + GFF1792 0.47 -1.0
452,729 + GFF1792 0.47 +0.1
452,729 + GFF1792 0.47 -0.1
452,729 + GFF1792 0.47 +0.3
452,730 - GFF1792 0.47 -0.3
452,730 - GFF1792 0.47 -0.8
452,730 - GFF1792 0.47 +1.4
452,730 - GFF1792 0.47 -0.4
452,730 - GFF1792 0.47 -0.4
452,801 + GFF1792 0.55 +0.5
452,801 + GFF1792 0.55 -0.4
452,801 + GFF1792 0.55 -0.5
452,802 - GFF1792 0.55 +0.2
452,802 - GFF1792 0.55 -0.2
452,885 + GFF1792 0.64 -2.0
452,885 + GFF1792 0.64 +0.2
452,886 - GFF1792 0.65 +0.8
452,886 - GFF1792 0.65 +1.5
452,918 + GFF1792 0.68 +0.4
453,094 - GFF1792 0.88 -0.3
453,094 - GFF1792 0.88 -1.7
453,094 - GFF1792 0.88 +0.4
453,094 - GFF1792 0.88 -0.5
453,094 - GFF1792 0.88 -0.6
453,094 - GFF1792 0.88 -0.0
453,094 - GFF1792 0.88 -0.5
453,123 + +0.7
453,123 + +0.3
453,123 + -0.0
453,123 + -1.3
453,123 + +0.1
453,123 + -0.4
453,124 - -1.0
453,124 - -1.4
453,124 - -0.1
453,124 - -0.1
453,124 - -0.9
453,124 - -0.2
453,124 - -2.1
453,124 - -1.2
453,190 + +0.1
453,191 - +0.5
453,191 - -0.4
453,191 - -0.0
453,670 + GFF1793 0.26 -0.7
453,670 + GFF1793 0.26 -0.4
453,671 - GFF1793 0.26 +0.7
453,671 - GFF1793 0.26 -0.6
453,671 - GFF1793 0.26 -0.9
453,911 - GFF1793 0.41 -0.9
453,949 + GFF1793 0.43 -0.4
453,949 + GFF1793 0.43 -0.5
453,949 + GFF1793 0.43 -0.6
453,950 - GFF1793 0.43 -0.4
453,950 - GFF1793 0.43 -0.5
453,950 - GFF1793 0.43 +0.5
454,111 + GFF1793 0.53 -0.3
454,153 + GFF1793 0.55 -0.3
454,153 + GFF1793 0.55 -0.2
454,153 + GFF1793 0.55 -0.8
454,195 + GFF1793 0.58 +0.3
454,195 + GFF1793 0.58 +0.3
454,195 + GFF1793 0.58 -0.3
454,195 + GFF1793 0.58 +0.1
454,196 - GFF1793 0.58 +1.0
454,196 - GFF1793 0.58 +0.7
454,196 - GFF1793 0.58 -1.4
454,196 - GFF1793 0.58 +1.3
454,196 - GFF1793 0.58 +0.9
454,338 - GFF1793 0.67 +0.5
454,338 - GFF1793 0.67 -0.9
454,387 + GFF1793 0.70 +0.4
454,519 + GFF1793 0.78 -0.9
454,519 + GFF1793 0.78 -0.3
454,519 + GFF1793 0.78 -1.0
454,519 + GFF1793 0.78 -0.2
454,519 + GFF1793 0.78 +0.2
454,520 - GFF1793 0.78 -0.4
454,520 - GFF1793 0.78 +1.7
454,567 + GFF1793 0.81 -0.4
454,567 + GFF1793 0.81 -0.6
454,567 + GFF1793 0.81 -2.1
454,567 + GFF1793 0.81 -0.4
454,567 + GFF1793 0.81 -0.5
454,568 - GFF1793 0.81 -0.6
454,568 - GFF1793 0.81 -0.6
454,783 - -3.1
454,840 + -0.9
454,840 + -0.9
454,841 - +0.3
454,841 - +0.0
454,841 - +0.5
454,841 - -0.9
454,880 - +0.7
455,175 + GFF1794 0.23 -1.0
455,175 + GFF1794 0.23 -0.3
455,175 + GFF1794 0.23 +0.6
455,377 + GFF1794 0.42 -0.0
455,377 + GFF1794 0.42 -0.0
455,378 - GFF1794 0.42 -0.5
455,395 + GFF1794 0.44 -1.2
455,395 + GFF1794 0.44 -0.0
455,419 + GFF1794 0.46 -0.7
455,419 + GFF1794 0.46 -0.0
455,419 + GFF1794 0.46 +0.7
455,419 + GFF1794 0.46 +0.0
455,533 + GFF1794 0.56 -0.2
455,534 - GFF1794 0.57 +0.0
455,593 + GFF1794 0.62 -0.1
455,594 - GFF1794 0.62 +1.7
455,594 - GFF1794 0.62 -0.3
455,668 + GFF1794 0.69 -0.9
455,669 - GFF1794 0.69 -0.5
455,755 + GFF1794 0.77 +0.4
455,755 + GFF1794 0.77 +0.3
455,755 + GFF1794 0.77 +0.8
455,755 + GFF1794 0.77 -0.5
455,755 + GFF1794 0.77 -1.4
455,755 + GFF1794 0.77 +0.1
455,755 + GFF1794 0.77 +0.7
455,755 + GFF1794 0.77 -0.1
455,756 - GFF1794 0.77 -0.4
455,756 - GFF1794 0.77 -0.1

Or see this region's nucleotide sequence