Strain Fitness in Variovorax sp. SCN45 around GFF1721

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1720 and GFF1721 overlap by 4 nucleotidesGFF1721 and GFF1722 are separated by 157 nucleotidesGFF1722 and GFF1723 overlap by 4 nucleotides GFF1720 - Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2, at 367,860 to 371,435 GFF1720 GFF1721 - no description, at 371,432 to 371,908 GFF1721 GFF1722 - hypothetical protein, at 372,066 to 372,764 GFF1722 GFF1723 - Extracytoplasmic function (ECF) sigma factor VreI, at 372,761 to 373,264 GFF1723 Position (kb) 371 372Strain fitness (log2 ratio) -2 -1 0 1at 370.861 kb on - strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.923 kb on + strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 370.924 kb on - strand, within GFF1720at 371.355 kb on + strandat 371.355 kb on + strandat 371.356 kb on - strandat 371.356 kb on - strandat 371.356 kb on - strandat 371.531 kb on + strand, within GFF1721at 371.531 kb on + strand, within GFF1721at 371.532 kb on - strand, within GFF1721at 371.657 kb on + strand, within GFF1721at 371.657 kb on + strand, within GFF1721at 371.657 kb on + strand, within GFF1721at 371.657 kb on + strand, within GFF1721at 371.658 kb on - strand, within GFF1721at 371.658 kb on - strand, within GFF1721at 371.871 kb on - strandat 371.990 kb on + strandat 371.990 kb on + strandat 371.990 kb on + strandat 371.990 kb on + strandat 371.991 kb on - strandat 371.991 kb on - strandat 371.991 kb on - strandat 371.991 kb on - strandat 372.043 kb on + strandat 372.043 kb on + strandat 372.043 kb on + strandat 372.044 kb on - strandat 372.044 kb on - strandat 372.044 kb on - strandat 372.059 kb on + strandat 372.059 kb on + strandat 372.059 kb on + strandat 372.060 kb on - strandat 372.060 kb on - strandat 372.060 kb on - strandat 372.060 kb on - strandat 372.080 kb on + strandat 372.080 kb on + strandat 372.080 kb on + strandat 372.081 kb on - strandat 372.081 kb on - strandat 372.081 kb on - strandat 372.081 kb on - strandat 372.081 kb on - strandat 372.081 kb on - strandat 372.240 kb on + strand, within GFF1722at 372.240 kb on + strand, within GFF1722at 372.240 kb on + strand, within GFF1722at 372.240 kb on + strand, within GFF1722at 372.240 kb on + strand, within GFF1722at 372.240 kb on + strand, within GFF1722at 372.240 kb on + strand, within GFF1722at 372.241 kb on - strand, within GFF1722at 372.241 kb on - strand, within GFF1722at 372.241 kb on - strand, within GFF1722at 372.270 kb on + strand, within GFF1722at 372.270 kb on + strand, within GFF1722at 372.270 kb on + strand, within GFF1722at 372.270 kb on + strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.271 kb on - strand, within GFF1722at 372.321 kb on + strand, within GFF1722at 372.321 kb on + strand, within GFF1722at 372.321 kb on + strand, within GFF1722at 372.322 kb on - strand, within GFF1722at 372.322 kb on - strand, within GFF1722at 372.323 kb on + strand, within GFF1722at 372.323 kb on + strand, within GFF1722at 372.323 kb on + strand, within GFF1722at 372.324 kb on - strand, within GFF1722at 372.324 kb on - strand, within GFF1722at 372.324 kb on - strand, within GFF1722at 372.378 kb on + strand, within GFF1722at 372.378 kb on + strand, within GFF1722at 372.378 kb on + strand, within GFF1722at 372.378 kb on + strand, within GFF1722at 372.378 kb on + strand, within GFF1722at 372.378 kb on + strand, within GFF1722at 372.378 kb on + strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.379 kb on - strand, within GFF1722at 372.495 kb on + strand, within GFF1722at 372.495 kb on + strand, within GFF1722at 372.496 kb on - strand, within GFF1722at 372.809 kb on + strandat 372.810 kb on - strandat 372.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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370,861 - GFF1720 0.84 -0.4
370,923 + GFF1720 0.86 -0.2
370,923 + GFF1720 0.86 +0.5
370,923 + GFF1720 0.86 +0.2
370,923 + GFF1720 0.86 -0.5
370,923 + GFF1720 0.86 +0.3
370,923 + GFF1720 0.86 +0.4
370,923 + GFF1720 0.86 -0.4
370,923 + GFF1720 0.86 -0.7
370,923 + GFF1720 0.86 -0.3
370,923 + GFF1720 0.86 -0.9
370,923 + GFF1720 0.86 -0.3
370,924 - GFF1720 0.86 -1.1
370,924 - GFF1720 0.86 -0.3
370,924 - GFF1720 0.86 -0.6
370,924 - GFF1720 0.86 -0.5
370,924 - GFF1720 0.86 -0.7
370,924 - GFF1720 0.86 -1.4
370,924 - GFF1720 0.86 -1.1
370,924 - GFF1720 0.86 -0.7
370,924 - GFF1720 0.86 -0.9
370,924 - GFF1720 0.86 -0.9
370,924 - GFF1720 0.86 -0.6
370,924 - GFF1720 0.86 -0.2
370,924 - GFF1720 0.86 -0.4
370,924 - GFF1720 0.86 +0.7
371,355 + +1.1
371,355 + -0.2
371,356 - -0.3
371,356 - -0.3
371,356 - -0.2
371,531 + GFF1721 0.21 -1.2
371,531 + GFF1721 0.21 -0.6
371,532 - GFF1721 0.21 -1.1
371,657 + GFF1721 0.47 -0.6
371,657 + GFF1721 0.47 -0.4
371,657 + GFF1721 0.47 +1.2
371,657 + GFF1721 0.47 +0.0
371,658 - GFF1721 0.47 -0.4
371,658 - GFF1721 0.47 -0.0
371,871 - -1.0
371,990 + -0.5
371,990 + -0.1
371,990 + -1.2
371,990 + -1.0
371,991 - -1.0
371,991 - +0.7
371,991 - -1.3
371,991 - -0.7
372,043 + -0.5
372,043 + -0.4
372,043 + -0.5
372,044 - -0.7
372,044 - +0.1
372,044 - +0.2
372,059 + -0.1
372,059 + -0.3
372,059 + -0.7
372,060 - -0.2
372,060 - -0.7
372,060 - -0.4
372,060 - +0.5
372,080 + -0.2
372,080 + -0.1
372,080 + -0.6
372,081 - -0.2
372,081 - -0.6
372,081 - -0.5
372,081 - +0.9
372,081 - -1.3
372,081 - -0.8
372,240 + GFF1722 0.25 -1.0
372,240 + GFF1722 0.25 -0.6
372,240 + GFF1722 0.25 -0.3
372,240 + GFF1722 0.25 +1.3
372,240 + GFF1722 0.25 -0.5
372,240 + GFF1722 0.25 -1.1
372,240 + GFF1722 0.25 -1.2
372,241 - GFF1722 0.25 -0.0
372,241 - GFF1722 0.25 -1.1
372,241 - GFF1722 0.25 +0.3
372,270 + GFF1722 0.29 -0.5
372,270 + GFF1722 0.29 +0.5
372,270 + GFF1722 0.29 -0.7
372,270 + GFF1722 0.29 -0.6
372,271 - GFF1722 0.29 -0.7
372,271 - GFF1722 0.29 -0.6
372,271 - GFF1722 0.29 -0.1
372,271 - GFF1722 0.29 -0.7
372,271 - GFF1722 0.29 -0.6
372,271 - GFF1722 0.29 -0.9
372,271 - GFF1722 0.29 -0.6
372,271 - GFF1722 0.29 +1.4
372,271 - GFF1722 0.29 -1.8
372,321 + GFF1722 0.36 +0.5
372,321 + GFF1722 0.36 +1.5
372,321 + GFF1722 0.36 -0.3
372,322 - GFF1722 0.37 -0.6
372,322 - GFF1722 0.37 -0.7
372,323 + GFF1722 0.37 -0.8
372,323 + GFF1722 0.37 -0.5
372,323 + GFF1722 0.37 -1.4
372,324 - GFF1722 0.37 -2.6
372,324 - GFF1722 0.37 +0.2
372,324 - GFF1722 0.37 -0.5
372,378 + GFF1722 0.45 +0.2
372,378 + GFF1722 0.45 -0.3
372,378 + GFF1722 0.45 -0.0
372,378 + GFF1722 0.45 +0.7
372,378 + GFF1722 0.45 -0.4
372,378 + GFF1722 0.45 -0.5
372,378 + GFF1722 0.45 -0.1
372,379 - GFF1722 0.45 -1.8
372,379 - GFF1722 0.45 -1.5
372,379 - GFF1722 0.45 +1.3
372,379 - GFF1722 0.45 -2.3
372,379 - GFF1722 0.45 -0.1
372,379 - GFF1722 0.45 +0.7
372,379 - GFF1722 0.45 -0.0
372,379 - GFF1722 0.45 -1.5
372,379 - GFF1722 0.45 -0.4
372,379 - GFF1722 0.45 -1.3
372,379 - GFF1722 0.45 -1.1
372,495 + GFF1722 0.61 -0.1
372,495 + GFF1722 0.61 -0.3
372,496 - GFF1722 0.62 -0.1
372,809 + +0.4
372,810 - +0.5
372,810 - -0.9

Or see this region's nucleotide sequence