Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1711 and GFF1712 are separated by 18 nucleotides GFF1712 and GFF1713 are separated by 88 nucleotides GFF1713 and GFF1714 are separated by 86 nucleotides
GFF1711 - DUF3701 domain / Site-specific tyrosine recombinase, at 356,751 to 358,595
GFF1711
GFF1712 - no description, at 358,614 to 359,102
GFF1712
GFF1713 - no description, at 359,191 to 359,361
GFF1713
GFF1714 - no description, at 359,448 to 359,600
GFF1714
Position (kb) 359
360 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 358.315 kb on + strand, within GFF1711 at 358.315 kb on + strand, within GFF1711 at 358.316 kb on - strand, within GFF1711 at 358.316 kb on - strand, within GFF1711 at 358.316 kb on - strand, within GFF1711 at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.546 kb on + strand at 358.547 kb on - strand at 358.547 kb on - strand at 358.547 kb on - strand at 359.005 kb on + strand, within GFF1712 at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.100 kb on + strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.101 kb on - strand at 359.107 kb on - strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.108 kb on + strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.109 kb on - strand at 359.126 kb on + strand at 359.127 kb on - strand at 359.193 kb on - strand at 359.293 kb on - strand, within GFF1713 at 359.293 kb on - strand, within GFF1713 at 359.299 kb on + strand, within GFF1713 at 359.299 kb on + strand, within GFF1713 at 359.299 kb on + strand, within GFF1713 at 359.299 kb on + strand, within GFF1713 at 359.390 kb on + strand at 359.391 kb on - strand at 359.473 kb on + strand, within GFF1714 at 359.473 kb on + strand, within GFF1714 at 359.473 kb on + strand, within GFF1714 at 359.473 kb on + strand, within GFF1714 at 359.473 kb on + strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.474 kb on - strand, within GFF1714 at 359.603 kb on - strand at 359.659 kb on + strand at 359.659 kb on + strand at 359.659 kb on + strand at 359.659 kb on + strand at 359.660 kb on - strand at 359.660 kb on - strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.707 kb on + strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.708 kb on - strand at 359.822 kb on - strand at 359.822 kb on - strand at 359.836 kb on + strand at 359.836 kb on + strand at 360.087 kb on + strand at 360.087 kb on + strand at 360.087 kb on + strand at 360.087 kb on + strand at 360.087 kb on + strand at 360.087 kb on + strand at 360.087 kb on + strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.088 kb on - strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.187 kb on + strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.188 kb on - strand at 360.343 kb on + strand at 360.344 kb on - strand at 360.344 kb on - strand at 360.344 kb on - strand at 360.354 kb on + strand at 360.355 kb on - strand at 360.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 358,315 + GFF1711 0.85 -0.6 358,315 + GFF1711 0.85 -1.3 358,316 - GFF1711 0.85 -1.4 358,316 - GFF1711 0.85 -2.1 358,316 - GFF1711 0.85 -0.3 358,546 + +1.7 358,546 + -0.4 358,546 + -0.4 358,546 + -0.6 358,546 + -0.1 358,546 + -0.7 358,546 + -0.2 358,547 - -0.9 358,547 - -0.9 358,547 - -1.3 359,005 + GFF1712 0.80 -1.1 359,100 + -2.4 359,100 + -1.0 359,100 + -0.9 359,100 + -0.6 359,100 + +0.9 359,100 + -0.3 359,100 + -0.2 359,101 - -0.7 359,101 - +0.7 359,101 - -0.7 359,101 - -0.7 359,101 - -1.0 359,101 - -0.7 359,101 - +0.4 359,107 - -0.3 359,108 + +0.3 359,108 + -0.8 359,108 + -0.5 359,108 + -0.1 359,108 + -0.1 359,108 + +0.3 359,108 + +0.0 359,108 + +0.4 359,108 + -0.1 359,108 + -0.3 359,108 + -0.9 359,108 + -0.6 359,108 + +0.0 359,109 - +0.2 359,109 - +0.4 359,109 - -1.1 359,109 - -1.1 359,109 - -0.5 359,109 - +1.0 359,109 - -0.0 359,109 - -0.9 359,109 - +0.1 359,109 - -0.0 359,109 - +0.4 359,109 - +0.2 359,109 - -0.4 359,109 - -0.8 359,126 + -0.4 359,127 - +0.1 359,193 - -0.5 359,293 - GFF1713 0.60 -1.7 359,293 - GFF1713 0.60 +0.2 359,299 + GFF1713 0.63 -0.1 359,299 + GFF1713 0.63 -0.7 359,299 + GFF1713 0.63 +0.7 359,299 + GFF1713 0.63 +3.5 359,390 + -0.5 359,391 - +1.2 359,473 + GFF1714 0.16 -0.1 359,473 + GFF1714 0.16 -0.6 359,473 + GFF1714 0.16 -0.2 359,473 + GFF1714 0.16 -0.4 359,473 + GFF1714 0.16 -0.0 359,474 - GFF1714 0.17 +1.4 359,474 - GFF1714 0.17 -0.1 359,474 - GFF1714 0.17 +0.3 359,474 - GFF1714 0.17 -0.0 359,474 - GFF1714 0.17 +1.5 359,603 - -0.3 359,659 + -0.1 359,659 + -0.6 359,659 + -1.0 359,659 + +0.1 359,660 - -0.7 359,660 - -0.6 359,707 + -0.3 359,707 + -0.1 359,707 + -0.8 359,707 + -0.0 359,707 + +0.1 359,707 + -0.4 359,707 + -0.8 359,707 + -0.3 359,707 + -0.5 359,707 + -0.1 359,707 + -0.6 359,707 + -2.7 359,707 + -0.6 359,707 + -0.4 359,707 + -0.2 359,707 + -0.5 359,708 - -0.6 359,708 - +0.5 359,708 - +0.5 359,708 - -0.4 359,708 - +1.2 359,708 - -0.0 359,708 - +0.2 359,708 - -0.5 359,708 - -0.7 359,708 - -0.6 359,708 - -0.4 359,708 - +0.9 359,708 - -0.9 359,822 - +0.3 359,822 - -0.7 359,836 + -0.8 359,836 + +0.0 360,087 + -1.0 360,087 + -0.2 360,087 + -0.3 360,087 + -2.4 360,087 + -0.2 360,087 + -0.7 360,087 + -2.6 360,088 - -0.8 360,088 - -0.6 360,088 - -1.2 360,088 - -1.5 360,088 - -0.6 360,088 - -1.4 360,088 - +3.9 360,088 - -1.0 360,088 - -0.1 360,088 - +1.3 360,187 + -0.5 360,187 + -0.6 360,187 + -0.6 360,187 + -2.2 360,187 + +0.3 360,187 + -0.9 360,187 + -0.3 360,187 + +0.5 360,187 + -0.4 360,187 + +0.1 360,187 + -0.1 360,187 + -0.7 360,187 + -0.1 360,187 + -1.7 360,187 + -0.6 360,187 + +0.5 360,187 + -0.3 360,187 + -0.8 360,187 + -0.1 360,187 + +0.0 360,187 + -0.1 360,187 + -0.2 360,188 - -2.3 360,188 - -0.4 360,188 - +0.1 360,188 - -1.1 360,188 - -0.3 360,188 - -0.7 360,188 - +0.2 360,188 - +0.0 360,188 - -0.5 360,188 - -0.6 360,188 - -0.4 360,188 - -1.1 360,188 - -0.4 360,188 - -0.6 360,188 - -0.0 360,188 - +2.1 360,188 - -1.3 360,188 - -0.2 360,188 - +0.5 360,188 - -0.6 360,188 - -0.3 360,343 + +0.5 360,344 - -1.0 360,344 - -0.6 360,344 - +0.5 360,354 + -0.3 360,355 - -0.3 360,355 - +0.3
Or see this region's nucleotide sequence