Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1705 and GFF1706 are separated by 2 nucleotides GFF1706 and GFF1707 are separated by 51 nucleotides GFF1707 and GFF1708 are separated by 1 nucleotides GFF1708 and GFF1709 are separated by 347 nucleotides
GFF1705 - ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) / C-terminal AAA-associated domain, at 351,049 to 352,410
GFF1705
GFF1706 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) / ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 352,413 to 354,155
GFF1706
GFF1707 - no description, at 354,207 to 354,416
GFF1707
GFF1708 - no description, at 354,418 to 354,618
GFF1708
GFF1709 - no description, at 354,966 to 355,295
GFF1709
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 351.470 kb on + strand, within GFF1705 at 351.470 kb on + strand, within GFF1705 at 351.470 kb on + strand, within GFF1705 at 351.470 kb on + strand, within GFF1705 at 351.470 kb on + strand, within GFF1705 at 351.471 kb on - strand, within GFF1705 at 351.471 kb on - strand, within GFF1705 at 351.471 kb on - strand, within GFF1705 at 351.471 kb on - strand, within GFF1705 at 351.471 kb on - strand, within GFF1705 at 351.995 kb on + strand, within GFF1705 at 351.995 kb on + strand, within GFF1705 at 351.995 kb on + strand, within GFF1705 at 351.996 kb on - strand, within GFF1705 at 351.996 kb on - strand, within GFF1705 at 351.996 kb on - strand, within GFF1705 at 352.113 kb on - strand, within GFF1705 at 352.447 kb on + strand at 352.447 kb on + strand at 352.447 kb on + strand at 352.448 kb on - strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.555 kb on + strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.556 kb on - strand at 352.724 kb on - strand, within GFF1706 at 352.724 kb on - strand, within GFF1706 at 352.792 kb on + strand, within GFF1706 at 352.792 kb on + strand, within GFF1706 at 352.792 kb on + strand, within GFF1706 at 352.792 kb on + strand, within GFF1706 at 352.792 kb on + strand, within GFF1706 at 352.792 kb on + strand, within GFF1706 at 352.792 kb on + strand, within GFF1706 at 352.792 kb on + strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 352.793 kb on - strand, within GFF1706 at 353.279 kb on - strand, within GFF1706 at 353.279 kb on - strand, within GFF1706 at 353.279 kb on - strand, within GFF1706 at 353.299 kb on + strand, within GFF1706 at 353.300 kb on - strand, within GFF1706 at 353.300 kb on - strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.473 kb on + strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.474 kb on - strand, within GFF1706 at 353.641 kb on + strand, within GFF1706 at 353.641 kb on + strand, within GFF1706 at 353.641 kb on + strand, within GFF1706 at 353.641 kb on + strand, within GFF1706 at 353.642 kb on - strand, within GFF1706 at 353.642 kb on - strand, within GFF1706 at 353.642 kb on - strand, within GFF1706 at 353.692 kb on + strand, within GFF1706 at 353.692 kb on + strand, within GFF1706 at 353.692 kb on + strand, within GFF1706 at 353.692 kb on + strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.693 kb on - strand, within GFF1706 at 353.894 kb on - strand, within GFF1706 at 353.965 kb on + strand, within GFF1706 at 353.966 kb on - strand, within GFF1706 at 353.966 kb on - strand, within GFF1706 at 353.966 kb on - strand, within GFF1706 at 353.968 kb on + strand, within GFF1706 at 353.968 kb on + strand, within GFF1706 at 353.969 kb on - strand, within GFF1706 at 354.147 kb on - strand at 354.147 kb on - strand at 354.229 kb on + strand, within GFF1707 at 354.230 kb on - strand, within GFF1707 at 354.230 kb on - strand, within GFF1707 at 354.230 kb on - strand, within GFF1707 at 354.424 kb on + strand at 354.591 kb on + strand, within GFF1708 at 354.591 kb on + strand, within GFF1708 at 354.591 kb on + strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.671 kb on + strand at 354.672 kb on - strand at 354.749 kb on + strand at 354.750 kb on - strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.973 kb on - strand at 354.973 kb on - strand at 355.145 kb on + strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 351,470 + GFF1705 0.31 -0.5 351,470 + GFF1705 0.31 +0.1 351,470 + GFF1705 0.31 -0.4 351,470 + GFF1705 0.31 +0.9 351,470 + GFF1705 0.31 -0.4 351,471 - GFF1705 0.31 -0.7 351,471 - GFF1705 0.31 +0.2 351,471 - GFF1705 0.31 +0.1 351,471 - GFF1705 0.31 -1.9 351,471 - GFF1705 0.31 +0.1 351,995 + GFF1705 0.69 -0.4 351,995 + GFF1705 0.69 -0.7 351,995 + GFF1705 0.69 +0.5 351,996 - GFF1705 0.70 -1.4 351,996 - GFF1705 0.70 -1.3 351,996 - GFF1705 0.70 -0.0 352,113 - GFF1705 0.78 -0.9 352,447 + -0.4 352,447 + -2.4 352,447 + -0.2 352,448 - +0.2 352,555 + -0.5 352,555 + -0.3 352,555 + +0.1 352,555 + -1.1 352,555 + -0.0 352,555 + -0.1 352,555 + +1.4 352,555 + -0.3 352,555 + -0.3 352,555 + -0.8 352,555 + -0.3 352,555 + -1.1 352,556 - -0.0 352,556 - +0.7 352,556 - +0.6 352,556 - -3.1 352,556 - -0.0 352,556 - -2.4 352,556 - -0.7 352,556 - -0.8 352,556 - -0.1 352,556 - -0.0 352,556 - -0.3 352,556 - -0.2 352,724 - GFF1706 0.18 +0.0 352,724 - GFF1706 0.18 -1.1 352,792 + GFF1706 0.22 -0.0 352,792 + GFF1706 0.22 +0.1 352,792 + GFF1706 0.22 -0.2 352,792 + GFF1706 0.22 -0.6 352,792 + GFF1706 0.22 -2.2 352,792 + GFF1706 0.22 +0.0 352,792 + GFF1706 0.22 -0.3 352,792 + GFF1706 0.22 +0.2 352,793 - GFF1706 0.22 +0.5 352,793 - GFF1706 0.22 +0.1 352,793 - GFF1706 0.22 -0.7 352,793 - GFF1706 0.22 -0.9 352,793 - GFF1706 0.22 -1.0 352,793 - GFF1706 0.22 +1.1 352,793 - GFF1706 0.22 -0.7 352,793 - GFF1706 0.22 +0.7 352,793 - GFF1706 0.22 +0.2 353,279 - GFF1706 0.50 -1.1 353,279 - GFF1706 0.50 +0.4 353,279 - GFF1706 0.50 +0.7 353,299 + GFF1706 0.51 -2.0 353,300 - GFF1706 0.51 +0.1 353,300 - GFF1706 0.51 -1.7 353,473 + GFF1706 0.61 -0.7 353,473 + GFF1706 0.61 +0.1 353,473 + GFF1706 0.61 +0.3 353,473 + GFF1706 0.61 -1.3 353,473 + GFF1706 0.61 +0.7 353,473 + GFF1706 0.61 -0.4 353,473 + GFF1706 0.61 -0.7 353,473 + GFF1706 0.61 -0.7 353,473 + GFF1706 0.61 +0.1 353,473 + GFF1706 0.61 +0.4 353,474 - GFF1706 0.61 -0.1 353,474 - GFF1706 0.61 -0.8 353,474 - GFF1706 0.61 -0.1 353,474 - GFF1706 0.61 -1.2 353,474 - GFF1706 0.61 +0.3 353,474 - GFF1706 0.61 -0.8 353,474 - GFF1706 0.61 +0.4 353,641 + GFF1706 0.70 -1.1 353,641 + GFF1706 0.70 +0.0 353,641 + GFF1706 0.70 +0.1 353,641 + GFF1706 0.70 -0.4 353,642 - GFF1706 0.71 +0.3 353,642 - GFF1706 0.71 -0.7 353,642 - GFF1706 0.71 -1.0 353,692 + GFF1706 0.73 -1.9 353,692 + GFF1706 0.73 +0.1 353,692 + GFF1706 0.73 -0.0 353,692 + GFF1706 0.73 -0.8 353,693 - GFF1706 0.73 +0.3 353,693 - GFF1706 0.73 +1.1 353,693 - GFF1706 0.73 -1.1 353,693 - GFF1706 0.73 -0.4 353,693 - GFF1706 0.73 -1.3 353,693 - GFF1706 0.73 -0.7 353,693 - GFF1706 0.73 +0.7 353,693 - GFF1706 0.73 +0.5 353,693 - GFF1706 0.73 -1.9 353,693 - GFF1706 0.73 -0.5 353,693 - GFF1706 0.73 -0.3 353,894 - GFF1706 0.85 -1.3 353,965 + GFF1706 0.89 +0.1 353,966 - GFF1706 0.89 -0.2 353,966 - GFF1706 0.89 -0.3 353,966 - GFF1706 0.89 -0.9 353,968 + GFF1706 0.89 +1.7 353,968 + GFF1706 0.89 -0.5 353,969 - GFF1706 0.89 +1.8 354,147 - -1.9 354,147 - +0.1 354,229 + GFF1707 0.10 +0.4 354,230 - GFF1707 0.11 -0.7 354,230 - GFF1707 0.11 +0.1 354,230 - GFF1707 0.11 +0.1 354,424 + -2.0 354,591 + GFF1708 0.86 -0.7 354,591 + GFF1708 0.86 +1.1 354,591 + GFF1708 0.86 +0.1 354,592 - GFF1708 0.87 +0.1 354,592 - GFF1708 0.87 -0.9 354,592 - GFF1708 0.87 -0.3 354,592 - GFF1708 0.87 -0.6 354,618 + +0.4 354,618 + -1.4 354,618 + -1.1 354,618 + -0.4 354,618 + -0.5 354,618 + +0.0 354,618 + -0.2 354,618 + +1.3 354,618 + -1.0 354,618 + -0.6 354,619 - -1.4 354,619 - -0.0 354,619 - -1.0 354,619 - +0.4 354,671 + -0.7 354,672 - +0.3 354,749 + -0.4 354,750 - -0.8 354,849 + +0.5 354,849 + +0.6 354,849 + -0.3 354,849 + +1.5 354,849 + -0.5 354,849 + +0.6 354,849 + -1.1 354,849 + -1.2 354,850 - +0.1 354,850 - -0.3 354,850 - -0.3 354,850 - -0.8 354,850 - +0.0 354,973 - -0.0 354,973 - +0.1 355,145 + GFF1709 0.54 +0.7 355,146 - GFF1709 0.55 -0.9 355,146 - GFF1709 0.55 +0.1 355,146 - GFF1709 0.55 -0.9 355,146 - GFF1709 0.55 -0.3 355,146 - GFF1709 0.55 -0.8 355,146 - GFF1709 0.55 -0.1
Or see this region's nucleotide sequence