Strain Fitness in Variovorax sp. SCN45 around GFF1705

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1703 and GFF1704 overlap by 8 nucleotidesGFF1704 and GFF1705 are separated by 24 nucleotidesGFF1705 and GFF1706 are separated by 2 nucleotides GFF1703 - DNA for 3-methylaspartate ammonia-lyase, glutamate mutase, at 349,332 to 350,723 GFF1703 GFF1704 - FIG00901292: hypothetical protein, at 350,716 to 351,024 GFF1704 GFF1705 - ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) / C-terminal AAA-associated domain, at 351,049 to 352,410 GFF1705 GFF1706 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) / ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 352,413 to 354,155 GFF1706 Position (kb) 351 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1at 350.095 kb on - strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.160 kb on + strand, within GFF1703at 350.161 kb on - strand, within GFF1703at 350.220 kb on + strand, within GFF1703at 350.220 kb on + strand, within GFF1703at 350.221 kb on - strand, within GFF1703at 350.343 kb on + strand, within GFF1703at 350.583 kb on + strand, within GFF1703at 350.584 kb on - strandat 350.680 kb on + strandat 350.721 kb on + strandat 350.721 kb on + strandat 350.721 kb on + strandat 350.721 kb on + strandat 350.722 kb on - strandat 350.722 kb on - strandat 350.821 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.992 kb on + strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 350.993 kb on - strand, within GFF1704at 351.022 kb on + strandat 351.022 kb on + strandat 351.022 kb on + strandat 351.023 kb on - strandat 351.023 kb on - strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.128 kb on + strandat 351.129 kb on - strandat 351.129 kb on - strandat 351.129 kb on - strandat 351.129 kb on - strandat 351.129 kb on - strandat 351.146 kb on + strandat 351.248 kb on + strand, within GFF1705at 351.248 kb on + strand, within GFF1705at 351.249 kb on - strand, within GFF1705at 351.249 kb on - strand, within GFF1705at 351.249 kb on - strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.470 kb on + strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.471 kb on - strand, within GFF1705at 351.995 kb on + strand, within GFF1705at 351.995 kb on + strand, within GFF1705at 351.995 kb on + strand, within GFF1705at 351.996 kb on - strand, within GFF1705at 351.996 kb on - strand, within GFF1705at 351.996 kb on - strand, within GFF1705at 352.113 kb on - strand, within GFF1705at 352.447 kb on + strandat 352.447 kb on + strandat 352.447 kb on + strandat 352.448 kb on - strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.555 kb on + strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.556 kb on - strandat 352.724 kb on - strand, within GFF1706at 352.724 kb on - strand, within GFF1706at 352.792 kb on + strand, within GFF1706at 352.792 kb on + strand, within GFF1706at 352.792 kb on + strand, within GFF1706at 352.792 kb on + strand, within GFF1706at 352.792 kb on + strand, within GFF1706at 352.792 kb on + strand, within GFF1706at 352.792 kb on + strand, within GFF1706at 352.792 kb on + strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 352.793 kb on - strand, within GFF1706at 353.279 kb on - strand, within GFF1706at 353.279 kb on - strand, within GFF1706at 353.279 kb on - strand, within GFF1706at 353.299 kb on + strand, within GFF1706at 353.300 kb on - strand, within GFF1706at 353.300 kb on - strand, within GFF1706

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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350,095 - GFF1703 0.55 -1.2
350,160 + GFF1703 0.59 +0.5
350,160 + GFF1703 0.59 +1.7
350,160 + GFF1703 0.59 +0.2
350,161 - GFF1703 0.60 +1.3
350,220 + GFF1703 0.64 +0.1
350,220 + GFF1703 0.64 -0.5
350,221 - GFF1703 0.64 +0.5
350,343 + GFF1703 0.73 -0.5
350,583 + GFF1703 0.90 -0.2
350,584 - -0.2
350,680 + -0.4
350,721 + -1.9
350,721 + +0.2
350,721 + +0.0
350,721 + -0.5
350,722 - -0.2
350,722 - -0.3
350,821 + GFF1704 0.34 +0.8
350,992 + GFF1704 0.89 +0.3
350,992 + GFF1704 0.89 -0.8
350,992 + GFF1704 0.89 +1.1
350,992 + GFF1704 0.89 -0.4
350,992 + GFF1704 0.89 -0.6
350,992 + GFF1704 0.89 +1.3
350,992 + GFF1704 0.89 -1.9
350,992 + GFF1704 0.89 -0.5
350,993 - GFF1704 0.90 -1.1
350,993 - GFF1704 0.90 -1.1
350,993 - GFF1704 0.90 -0.3
350,993 - GFF1704 0.90 +0.1
350,993 - GFF1704 0.90 -0.9
350,993 - GFF1704 0.90 -0.6
350,993 - GFF1704 0.90 -0.8
350,993 - GFF1704 0.90 +0.5
351,022 + +0.1
351,022 + +0.4
351,022 + -0.6
351,023 - -0.0
351,023 - -1.1
351,128 + -1.6
351,128 + -0.2
351,128 + -0.1
351,128 + -0.5
351,128 + +1.7
351,128 + +0.7
351,129 - +0.7
351,129 - -2.0
351,129 - -0.1
351,129 - -0.8
351,129 - -2.1
351,146 + -0.7
351,248 + GFF1705 0.15 +0.1
351,248 + GFF1705 0.15 -0.3
351,249 - GFF1705 0.15 -0.9
351,249 - GFF1705 0.15 -0.9
351,249 - GFF1705 0.15 -0.0
351,470 + GFF1705 0.31 -0.5
351,470 + GFF1705 0.31 +0.1
351,470 + GFF1705 0.31 -0.4
351,470 + GFF1705 0.31 +0.9
351,470 + GFF1705 0.31 -0.4
351,471 - GFF1705 0.31 -0.7
351,471 - GFF1705 0.31 +0.2
351,471 - GFF1705 0.31 +0.1
351,471 - GFF1705 0.31 -1.9
351,471 - GFF1705 0.31 +0.1
351,995 + GFF1705 0.69 -0.4
351,995 + GFF1705 0.69 -0.7
351,995 + GFF1705 0.69 +0.5
351,996 - GFF1705 0.70 -1.4
351,996 - GFF1705 0.70 -1.3
351,996 - GFF1705 0.70 -0.0
352,113 - GFF1705 0.78 -0.9
352,447 + -0.4
352,447 + -2.4
352,447 + -0.2
352,448 - +0.2
352,555 + -0.5
352,555 + -0.3
352,555 + +0.1
352,555 + -1.1
352,555 + -0.0
352,555 + -0.1
352,555 + +1.4
352,555 + -0.3
352,555 + -0.3
352,555 + -0.8
352,555 + -0.3
352,555 + -1.1
352,556 - -0.0
352,556 - +0.7
352,556 - +0.6
352,556 - -3.1
352,556 - -0.0
352,556 - -2.4
352,556 - -0.7
352,556 - -0.8
352,556 - -0.1
352,556 - -0.0
352,556 - -0.3
352,556 - -0.2
352,724 - GFF1706 0.18 +0.0
352,724 - GFF1706 0.18 -1.1
352,792 + GFF1706 0.22 -0.0
352,792 + GFF1706 0.22 +0.1
352,792 + GFF1706 0.22 -0.2
352,792 + GFF1706 0.22 -0.6
352,792 + GFF1706 0.22 -2.2
352,792 + GFF1706 0.22 +0.0
352,792 + GFF1706 0.22 -0.3
352,792 + GFF1706 0.22 +0.2
352,793 - GFF1706 0.22 +0.5
352,793 - GFF1706 0.22 +0.1
352,793 - GFF1706 0.22 -0.7
352,793 - GFF1706 0.22 -0.9
352,793 - GFF1706 0.22 -1.0
352,793 - GFF1706 0.22 +1.1
352,793 - GFF1706 0.22 -0.7
352,793 - GFF1706 0.22 +0.7
352,793 - GFF1706 0.22 +0.2
353,279 - GFF1706 0.50 -1.1
353,279 - GFF1706 0.50 +0.4
353,279 - GFF1706 0.50 +0.7
353,299 + GFF1706 0.51 -2.0
353,300 - GFF1706 0.51 +0.1
353,300 - GFF1706 0.51 -1.7

Or see this region's nucleotide sequence