Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1680 and GFF1681 are separated by 39 nucleotides GFF1681 and GFF1682 are separated by 1 nucleotides GFF1682 and GFF1683 overlap by 4 nucleotides GFF1683 and GFF1684 overlap by 4 nucleotides
GFF1680 - KEGG: GntR family transcriptional regulator, at 325,105 to 325,986
GFF1680
GFF1681 - Methylisocitrate lyase (EC 4.1.3.30), at 326,026 to 326,898
GFF1681
GFF1682 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 326,900 to 328,300
GFF1682
GFF1683 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 328,297 to 328,929
GFF1683
GFF1684 - no description, at 328,926 to 329,564
GFF1684
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -2
-1
0
1 at 326.092 kb on + strand at 326.144 kb on - strand, within GFF1681 at 326.282 kb on - strand, within GFF1681 at 326.698 kb on + strand, within GFF1681 at 326.699 kb on - strand, within GFF1681 at 327.489 kb on + strand, within GFF1682 at 327.872 kb on + strand, within GFF1682 at 327.872 kb on + strand, within GFF1682 at 327.873 kb on - strand, within GFF1682 at 328.423 kb on + strand, within GFF1683
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 326,092 + -2.1 326,144 - GFF1681 0.14 +0.2 326,282 - GFF1681 0.29 +0.5 326,698 + GFF1681 0.77 -0.4 326,699 - GFF1681 0.77 -1.7 327,489 + GFF1682 0.42 -1.4 327,872 + GFF1682 0.69 +0.5 327,872 + GFF1682 0.69 +0.0 327,873 - GFF1682 0.69 +0.6 328,423 + GFF1683 0.20 +0.9
Or see this region's nucleotide sequence