Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1664 and GFF1665 overlap by 4 nucleotides GFF1665 and GFF1666 overlap by 4 nucleotides GFF1666 and GFF1667 overlap by 4 nucleotides
GFF1664 - redox proteins related to the succinate dehydrogenases and fumarate reductases, at 307,969 to 309,384
GFF1664
GFF1665 - Nicotinamidase/isochorismatase family protein, at 309,381 to 309,995
GFF1665
GFF1666 - N-methylhydantoinase A (EC 3.5.2.14), at 309,992 to 312,049
GFF1666
GFF1667 - N-methylhydantoinase B (EC 3.5.2.14), at 312,046 to 313,728
GFF1667
Position (kb) 309
310
311
312
313 Strain fitness (log2 ratio) -2
-1
0
1
2 at 309.065 kb on + strand, within GFF1664 at 309.065 kb on + strand, within GFF1664 at 309.066 kb on - strand, within GFF1664 at 309.637 kb on + strand, within GFF1665 at 309.907 kb on + strand, within GFF1665 at 309.907 kb on + strand, within GFF1665 at 309.907 kb on + strand, within GFF1665 at 310.318 kb on - strand, within GFF1666 at 310.707 kb on + strand, within GFF1666 at 310.707 kb on + strand, within GFF1666 at 310.707 kb on + strand, within GFF1666 at 310.707 kb on + strand, within GFF1666 at 310.708 kb on - strand, within GFF1666 at 310.708 kb on - strand, within GFF1666 at 310.708 kb on - strand, within GFF1666 at 311.391 kb on + strand, within GFF1666 at 311.391 kb on + strand, within GFF1666 at 311.553 kb on + strand, within GFF1666 at 312.083 kb on + strand at 312.083 kb on + strand at 312.083 kb on + strand at 312.083 kb on + strand at 312.083 kb on + strand at 312.084 kb on - strand at 312.084 kb on - strand at 312.084 kb on - strand at 312.632 kb on + strand, within GFF1667 at 312.633 kb on - strand, within GFF1667 at 312.839 kb on + strand, within GFF1667 at 312.839 kb on + strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 312.840 kb on - strand, within GFF1667 at 313.007 kb on + strand, within GFF1667
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 309,065 + GFF1664 0.77 -0.8 309,065 + GFF1664 0.77 -2.2 309,066 - GFF1664 0.77 -1.6 309,637 + GFF1665 0.42 -0.9 309,907 + GFF1665 0.86 -0.9 309,907 + GFF1665 0.86 -0.5 309,907 + GFF1665 0.86 +1.0 310,318 - GFF1666 0.16 -0.3 310,707 + GFF1666 0.35 -0.7 310,707 + GFF1666 0.35 +0.1 310,707 + GFF1666 0.35 +0.0 310,707 + GFF1666 0.35 +0.1 310,708 - GFF1666 0.35 +0.5 310,708 - GFF1666 0.35 -0.0 310,708 - GFF1666 0.35 -2.5 311,391 + GFF1666 0.68 -0.1 311,391 + GFF1666 0.68 -0.6 311,553 + GFF1666 0.76 -1.0 312,083 + -0.6 312,083 + -0.1 312,083 + -0.1 312,083 + -0.8 312,083 + +1.4 312,084 - +2.0 312,084 - +0.1 312,084 - +1.0 312,632 + GFF1667 0.35 -0.2 312,633 - GFF1667 0.35 -0.7 312,839 + GFF1667 0.47 +0.2 312,839 + GFF1667 0.47 +0.1 312,840 - GFF1667 0.47 -0.5 312,840 - GFF1667 0.47 -1.3 312,840 - GFF1667 0.47 -0.4 312,840 - GFF1667 0.47 -0.6 312,840 - GFF1667 0.47 -0.6 313,007 + GFF1667 0.57 +0.7
Or see this region's nucleotide sequence