Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF164 and GFF165 are separated by 171 nucleotides GFF165 and GFF166 are separated by 8 nucleotides
GFF164 - DinG family ATP-dependent helicase CPE1197, at 190,626 to 192,929
GFF164
GFF165 - Chromate transport protein ChrA, at 193,101 to 194,468
GFF165
GFF166 - Permease of the drug/metabolite transporter (DMT) superfamily, at 194,477 to 195,532
GFF166
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 192.319 kb on + strand, within GFF164 at 192.319 kb on + strand, within GFF164 at 192.319 kb on + strand, within GFF164 at 192.319 kb on + strand, within GFF164 at 192.320 kb on - strand, within GFF164 at 192.320 kb on - strand, within GFF164 at 192.320 kb on - strand, within GFF164 at 192.372 kb on + strand, within GFF164 at 192.372 kb on + strand, within GFF164 at 192.373 kb on - strand, within GFF164 at 192.373 kb on - strand, within GFF164 at 192.440 kb on - strand, within GFF164 at 192.532 kb on + strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.533 kb on - strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.589 kb on + strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.590 kb on - strand, within GFF164 at 192.695 kb on - strand, within GFF164 at 192.760 kb on + strand at 192.760 kb on + strand at 192.949 kb on + strand at 192.949 kb on + strand at 192.950 kb on - strand at 192.950 kb on - strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.951 kb on + strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.952 kb on - strand at 192.983 kb on + strand at 192.983 kb on + strand at 192.983 kb on + strand at 192.983 kb on + strand at 192.984 kb on - strand at 192.984 kb on - strand at 192.984 kb on - strand at 192.984 kb on - strand at 192.984 kb on - strand at 192.984 kb on - strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.012 kb on + strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.013 kb on - strand at 193.241 kb on + strand, within GFF165 at 193.241 kb on + strand, within GFF165 at 193.241 kb on + strand, within GFF165 at 193.242 kb on - strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.347 kb on + strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.348 kb on - strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.446 kb on + strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.447 kb on - strand, within GFF165 at 193.488 kb on + strand, within GFF165 at 193.488 kb on + strand, within GFF165 at 193.489 kb on - strand, within GFF165 at 193.489 kb on - strand, within GFF165 at 193.603 kb on + strand, within GFF165 at 193.728 kb on + strand, within GFF165 at 193.728 kb on + strand, within GFF165 at 193.728 kb on + strand, within GFF165 at 193.729 kb on - strand, within GFF165 at 193.729 kb on - strand, within GFF165 at 193.729 kb on - strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.935 kb on + strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.936 kb on - strand, within GFF165 at 193.950 kb on + strand, within GFF165 at 193.950 kb on + strand, within GFF165 at 193.950 kb on + strand, within GFF165 at 193.950 kb on + strand, within GFF165 at 193.951 kb on - strand, within GFF165 at 193.951 kb on - strand, within GFF165 at 193.951 kb on - strand, within GFF165 at 193.956 kb on + strand, within GFF165 at 193.956 kb on + strand, within GFF165 at 193.956 kb on + strand, within GFF165 at 193.957 kb on - strand, within GFF165 at 194.301 kb on + strand, within GFF165 at 194.466 kb on + strand at 194.467 kb on - strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.474 kb on + strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.475 kb on - strand at 194.478 kb on + strand at 194.478 kb on + strand at 194.478 kb on + strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.479 kb on - strand at 194.717 kb on + strand, within GFF166 at 194.717 kb on + strand, within GFF166 at 194.726 kb on - strand, within GFF166 at 194.726 kb on - strand, within GFF166 at 194.726 kb on - strand, within GFF166 at 194.832 kb on + strand, within GFF166 at 194.832 kb on + strand, within GFF166 at 194.832 kb on + strand, within GFF166 at 194.832 kb on + strand, within GFF166 at 194.833 kb on - strand, within GFF166 at 194.833 kb on - strand, within GFF166 at 194.833 kb on - strand, within GFF166 at 194.833 kb on - strand, within GFF166 at 195.168 kb on + strand, within GFF166 at 195.169 kb on - strand, within GFF166 at 195.169 kb on - strand, within GFF166
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 192,319 + GFF164 0.73 +2.2 192,319 + GFF164 0.73 -0.4 192,319 + GFF164 0.73 -0.6 192,319 + GFF164 0.73 -0.4 192,320 - GFF164 0.74 +0.2 192,320 - GFF164 0.74 -0.6 192,320 - GFF164 0.74 -0.1 192,372 + GFF164 0.76 -0.4 192,372 + GFF164 0.76 -0.4 192,373 - GFF164 0.76 -0.9 192,373 - GFF164 0.76 +0.6 192,440 - GFF164 0.79 +0.5 192,532 + GFF164 0.83 +0.8 192,533 - GFF164 0.83 -0.4 192,533 - GFF164 0.83 -0.9 192,533 - GFF164 0.83 -0.1 192,533 - GFF164 0.83 -0.5 192,533 - GFF164 0.83 -0.4 192,589 + GFF164 0.85 +0.4 192,589 + GFF164 0.85 -0.2 192,589 + GFF164 0.85 +0.4 192,589 + GFF164 0.85 +0.1 192,589 + GFF164 0.85 -1.6 192,589 + GFF164 0.85 -0.9 192,589 + GFF164 0.85 +2.2 192,589 + GFF164 0.85 -0.4 192,589 + GFF164 0.85 -1.7 192,589 + GFF164 0.85 -0.3 192,589 + GFF164 0.85 -0.8 192,589 + GFF164 0.85 +0.9 192,589 + GFF164 0.85 -1.2 192,589 + GFF164 0.85 +0.2 192,589 + GFF164 0.85 -0.6 192,590 - GFF164 0.85 -1.4 192,590 - GFF164 0.85 +0.1 192,590 - GFF164 0.85 -0.6 192,590 - GFF164 0.85 -0.7 192,590 - GFF164 0.85 -0.5 192,590 - GFF164 0.85 -0.4 192,590 - GFF164 0.85 -0.1 192,590 - GFF164 0.85 +0.1 192,590 - GFF164 0.85 -0.4 192,590 - GFF164 0.85 -0.8 192,590 - GFF164 0.85 -0.2 192,590 - GFF164 0.85 +0.0 192,590 - GFF164 0.85 -2.4 192,590 - GFF164 0.85 -0.8 192,590 - GFF164 0.85 +0.5 192,590 - GFF164 0.85 +0.2 192,695 - GFF164 0.90 +1.8 192,760 + +0.2 192,760 + +0.2 192,949 + -1.8 192,949 + -0.5 192,950 - +0.9 192,950 - +0.2 192,951 + +0.5 192,951 + -0.8 192,951 + -1.3 192,951 + -0.6 192,951 + +1.8 192,951 + +1.1 192,951 + -0.2 192,951 + +0.2 192,951 + -0.5 192,952 - -1.2 192,952 - -0.4 192,952 - -0.3 192,952 - -1.0 192,952 - +0.5 192,952 - +0.2 192,952 - +0.0 192,952 - -0.2 192,952 - +0.8 192,952 - +0.0 192,983 + +0.4 192,983 + -0.5 192,983 + +0.8 192,983 + -1.0 192,984 - -1.0 192,984 - -0.3 192,984 - +0.4 192,984 - +0.2 192,984 - +0.1 192,984 - +0.8 193,012 + +2.4 193,012 + +0.9 193,012 + +1.4 193,012 + +0.0 193,012 + +0.5 193,012 + -1.1 193,013 - -0.1 193,013 - -0.6 193,013 - +0.4 193,013 - -0.2 193,013 - -0.6 193,013 - -1.2 193,013 - -0.0 193,013 - -0.7 193,013 - -0.2 193,013 - +0.0 193,241 + GFF165 0.10 +0.6 193,241 + GFF165 0.10 -0.2 193,241 + GFF165 0.10 +0.2 193,242 - GFF165 0.10 -1.3 193,347 + GFF165 0.18 -0.1 193,347 + GFF165 0.18 +0.2 193,347 + GFF165 0.18 -0.7 193,347 + GFF165 0.18 +0.2 193,347 + GFF165 0.18 +0.2 193,347 + GFF165 0.18 -0.6 193,347 + GFF165 0.18 -0.5 193,347 + GFF165 0.18 -0.0 193,347 + GFF165 0.18 +0.4 193,347 + GFF165 0.18 -0.2 193,347 + GFF165 0.18 -0.4 193,347 + GFF165 0.18 +0.0 193,347 + GFF165 0.18 -0.5 193,347 + GFF165 0.18 -0.2 193,347 + GFF165 0.18 -1.6 193,348 - GFF165 0.18 -0.1 193,348 - GFF165 0.18 +1.0 193,348 - GFF165 0.18 -0.4 193,348 - GFF165 0.18 +0.4 193,348 - GFF165 0.18 +0.6 193,348 - GFF165 0.18 -0.2 193,348 - GFF165 0.18 -0.3 193,348 - GFF165 0.18 +0.3 193,348 - GFF165 0.18 -0.4 193,348 - GFF165 0.18 -0.1 193,348 - GFF165 0.18 -0.4 193,348 - GFF165 0.18 +0.8 193,446 + GFF165 0.25 +0.2 193,446 + GFF165 0.25 +2.2 193,446 + GFF165 0.25 +0.8 193,446 + GFF165 0.25 +1.4 193,446 + GFF165 0.25 -0.9 193,446 + GFF165 0.25 -1.2 193,446 + GFF165 0.25 +0.4 193,446 + GFF165 0.25 -0.6 193,446 + GFF165 0.25 +0.1 193,446 + GFF165 0.25 -0.2 193,447 - GFF165 0.25 -0.9 193,447 - GFF165 0.25 +0.3 193,447 - GFF165 0.25 +2.4 193,447 - GFF165 0.25 +0.9 193,447 - GFF165 0.25 +1.8 193,447 - GFF165 0.25 -1.2 193,447 - GFF165 0.25 +0.4 193,447 - GFF165 0.25 +1.0 193,447 - GFF165 0.25 +1.8 193,447 - GFF165 0.25 -1.0 193,447 - GFF165 0.25 -0.6 193,488 + GFF165 0.28 +0.8 193,488 + GFF165 0.28 -1.0 193,489 - GFF165 0.28 -1.0 193,489 - GFF165 0.28 -0.7 193,603 + GFF165 0.37 -0.1 193,728 + GFF165 0.46 -0.6 193,728 + GFF165 0.46 +0.8 193,728 + GFF165 0.46 -1.5 193,729 - GFF165 0.46 +1.2 193,729 - GFF165 0.46 -0.3 193,729 - GFF165 0.46 -1.4 193,935 + GFF165 0.61 +1.0 193,935 + GFF165 0.61 -0.5 193,935 + GFF165 0.61 -0.3 193,935 + GFF165 0.61 -2.3 193,935 + GFF165 0.61 +0.2 193,936 - GFF165 0.61 -0.1 193,936 - GFF165 0.61 -0.3 193,936 - GFF165 0.61 -0.9 193,936 - GFF165 0.61 -1.2 193,936 - GFF165 0.61 +0.3 193,936 - GFF165 0.61 -0.1 193,950 + GFF165 0.62 -2.9 193,950 + GFF165 0.62 +0.4 193,950 + GFF165 0.62 -0.7 193,950 + GFF165 0.62 +0.4 193,951 - GFF165 0.62 -1.4 193,951 - GFF165 0.62 -0.2 193,951 - GFF165 0.62 +0.2 193,956 + GFF165 0.62 -0.2 193,956 + GFF165 0.62 -0.7 193,956 + GFF165 0.62 +0.4 193,957 - GFF165 0.63 -1.2 194,301 + GFF165 0.88 +0.4 194,466 + +0.7 194,467 - +1.4 194,474 + -0.1 194,474 + -0.1 194,474 + -1.3 194,474 + -0.1 194,474 + -0.2 194,474 + +1.0 194,474 + -0.4 194,474 + -0.1 194,474 + +0.1 194,475 - -0.5 194,475 - +0.5 194,475 - -0.5 194,475 - -0.0 194,475 - +0.2 194,475 - -0.9 194,475 - -0.2 194,478 + -1.0 194,478 + -1.0 194,478 + -0.5 194,479 - +0.6 194,479 - -2.0 194,479 - +1.2 194,479 - -0.4 194,479 - +0.5 194,479 - -0.1 194,479 - -0.0 194,717 + GFF166 0.23 -0.2 194,717 + GFF166 0.23 +0.4 194,726 - GFF166 0.24 +0.0 194,726 - GFF166 0.24 -0.9 194,726 - GFF166 0.24 -0.2 194,832 + GFF166 0.34 -0.2 194,832 + GFF166 0.34 -1.9 194,832 + GFF166 0.34 +0.1 194,832 + GFF166 0.34 -0.7 194,833 - GFF166 0.34 -0.8 194,833 - GFF166 0.34 +0.9 194,833 - GFF166 0.34 -1.2 194,833 - GFF166 0.34 -0.3 195,168 + GFF166 0.65 -0.8 195,169 - GFF166 0.66 -0.3 195,169 - GFF166 0.66 -0.6
Or see this region's nucleotide sequence