Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1636 and GFF1637 are separated by 84 nucleotides GFF1637 and GFF1638 overlap by 4 nucleotides
GFF1636 - Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 256,850 to 260,152
GFF1636
GFF1637 - Polyketide synthase modules and related proteins, at 260,237 to 264,835
GFF1637
GFF1638 - Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 264,832 to 268,113
GFF1638
Position (kb) 260
261
262
263
264
265 Strain fitness (log2 ratio) -2
-1
0
1 at 259.270 kb on + strand, within GFF1636 at 259.350 kb on + strand, within GFF1636 at 259.603 kb on + strand, within GFF1636 at 259.603 kb on + strand, within GFF1636 at 259.604 kb on - strand, within GFF1636 at 259.865 kb on + strand at 259.866 kb on - strand at 259.941 kb on + strand at 259.942 kb on - strand at 260.220 kb on - strand at 260.845 kb on - strand, within GFF1637 at 261.709 kb on - strand, within GFF1637 at 261.807 kb on + strand, within GFF1637 at 261.808 kb on - strand, within GFF1637 at 261.808 kb on - strand, within GFF1637 at 261.891 kb on + strand, within GFF1637 at 262.017 kb on + strand, within GFF1637 at 262.170 kb on + strand, within GFF1637 at 262.171 kb on - strand, within GFF1637 at 262.171 kb on - strand, within GFF1637 at 262.191 kb on + strand, within GFF1637 at 262.233 kb on + strand, within GFF1637 at 262.253 kb on + strand, within GFF1637 at 262.495 kb on - strand, within GFF1637 at 262.917 kb on + strand, within GFF1637 at 262.917 kb on + strand, within GFF1637 at 263.163 kb on + strand, within GFF1637 at 263.243 kb on + strand, within GFF1637 at 263.243 kb on + strand, within GFF1637 at 263.243 kb on + strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.244 kb on - strand, within GFF1637 at 263.283 kb on + strand, within GFF1637 at 263.283 kb on + strand, within GFF1637 at 263.283 kb on + strand, within GFF1637 at 263.284 kb on - strand, within GFF1637 at 263.495 kb on + strand, within GFF1637 at 263.496 kb on - strand, within GFF1637 at 263.661 kb on + strand, within GFF1637 at 263.878 kb on - strand, within GFF1637 at 264.319 kb on - strand, within GFF1637 at 264.432 kb on + strand at 264.456 kb on + strand at 264.556 kb on - strand at 265.143 kb on + strand at 265.346 kb on + strand, within GFF1638 at 265.643 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.799 kb on + strand, within GFF1638 at 265.808 kb on + strand, within GFF1638 at 265.809 kb on - strand, within GFF1638
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 259,270 + GFF1636 0.73 -0.2 259,350 + GFF1636 0.76 +0.1 259,603 + GFF1636 0.83 -0.7 259,603 + GFF1636 0.83 +0.8 259,604 - GFF1636 0.83 -0.8 259,865 + +0.1 259,866 - -1.0 259,941 + -1.4 259,942 - -0.7 260,220 - -0.5 260,845 - GFF1637 0.13 -0.0 261,709 - GFF1637 0.32 -0.1 261,807 + GFF1637 0.34 +0.3 261,808 - GFF1637 0.34 +0.5 261,808 - GFF1637 0.34 +0.0 261,891 + GFF1637 0.36 +0.3 262,017 + GFF1637 0.39 -0.6 262,170 + GFF1637 0.42 +0.3 262,171 - GFF1637 0.42 +0.1 262,171 - GFF1637 0.42 -1.1 262,191 + GFF1637 0.42 +0.4 262,233 + GFF1637 0.43 -0.2 262,253 + GFF1637 0.44 -0.5 262,495 - GFF1637 0.49 +0.1 262,917 + GFF1637 0.58 +1.0 262,917 + GFF1637 0.58 -1.1 263,163 + GFF1637 0.64 +0.0 263,243 + GFF1637 0.65 -0.2 263,243 + GFF1637 0.65 +0.3 263,243 + GFF1637 0.65 +0.3 263,244 - GFF1637 0.65 -0.3 263,244 - GFF1637 0.65 -0.6 263,244 - GFF1637 0.65 +1.6 263,244 - GFF1637 0.65 +0.2 263,244 - GFF1637 0.65 -0.2 263,244 - GFF1637 0.65 +0.3 263,283 + GFF1637 0.66 -1.2 263,283 + GFF1637 0.66 +0.2 263,283 + GFF1637 0.66 -0.3 263,284 - GFF1637 0.66 +0.3 263,495 + GFF1637 0.71 -0.0 263,496 - GFF1637 0.71 +0.5 263,661 + GFF1637 0.74 -0.4 263,878 - GFF1637 0.79 -0.2 264,319 - GFF1637 0.89 -0.3 264,432 + -2.0 264,456 + -0.3 264,556 - -1.0 265,143 + -0.5 265,346 + GFF1638 0.16 -0.9 265,643 + GFF1638 0.25 -0.1 265,697 + GFF1638 0.26 -0.4 265,697 + GFF1638 0.26 -0.1 265,697 + GFF1638 0.26 -0.0 265,698 - GFF1638 0.26 -0.6 265,698 - GFF1638 0.26 -0.3 265,698 - GFF1638 0.26 -0.1 265,698 - GFF1638 0.26 -1.2 265,799 + GFF1638 0.29 -1.3 265,808 + GFF1638 0.30 -0.5 265,809 - GFF1638 0.30 -0.5
Or see this region's nucleotide sequence