Strain Fitness in Variovorax sp. SCN45 around GFF160

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF159 and GFF160 are separated by 103 nucleotidesGFF160 and GFF161 are separated by 2 nucleotidesGFF161 and GFF162 are separated by 10 nucleotides GFF159 - Acyl-CoA dehydrogenase/oxidase domain protein, at 186,846 to 187,865 GFF159 GFF160 - hypothetical protein, at 187,969 to 188,559 GFF160 GFF161 - hypothetical protein, at 188,562 to 189,185 GFF161 GFF162 - hypothetical protein, at 189,196 to 190,413 GFF162 Position (kb) 187 188 189Strain fitness (log2 ratio) -2 -1 0 1 2at 187.163 kb on + strand, within GFF159at 187.163 kb on + strand, within GFF159at 187.163 kb on + strand, within GFF159at 187.163 kb on + strand, within GFF159at 187.163 kb on + strand, within GFF159at 187.163 kb on + strand, within GFF159at 187.164 kb on - strand, within GFF159at 187.303 kb on + strand, within GFF159at 187.303 kb on + strand, within GFF159at 187.303 kb on + strand, within GFF159at 187.303 kb on + strand, within GFF159at 187.304 kb on - strand, within GFF159at 187.304 kb on - strand, within GFF159at 187.304 kb on - strand, within GFF159at 187.304 kb on - strand, within GFF159at 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.839 kb on + strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.840 kb on - strandat 187.877 kb on - strandat 187.924 kb on + strandat 187.924 kb on + strandat 187.925 kb on - strandat 187.925 kb on - strandat 187.925 kb on - strandat 187.925 kb on - strandat 187.925 kb on - strandat 187.925 kb on - strandat 187.925 kb on - strandat 188.168 kb on + strand, within GFF160at 188.169 kb on - strand, within GFF160at 188.177 kb on + strand, within GFF160at 188.178 kb on - strand, within GFF160at 188.264 kb on + strand, within GFF160at 188.265 kb on - strand, within GFF160at 188.265 kb on - strand, within GFF160at 188.402 kb on + strand, within GFF160at 188.402 kb on + strand, within GFF160at 188.403 kb on - strand, within GFF160at 188.403 kb on - strand, within GFF160at 188.403 kb on - strand, within GFF160at 188.403 kb on - strand, within GFF160at 188.574 kb on - strandat 188.596 kb on + strandat 188.596 kb on + strandat 188.596 kb on + strandat 188.596 kb on + strandat 188.597 kb on - strandat 188.597 kb on - strandat 188.662 kb on + strand, within GFF161at 188.662 kb on + strand, within GFF161at 188.662 kb on + strand, within GFF161at 188.662 kb on + strand, within GFF161at 188.663 kb on - strand, within GFF161at 188.663 kb on - strand, within GFF161at 188.663 kb on - strand, within GFF161at 188.663 kb on - strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.728 kb on + strand, within GFF161at 188.729 kb on - strand, within GFF161at 188.729 kb on - strand, within GFF161at 188.729 kb on - strand, within GFF161at 188.729 kb on - strand, within GFF161at 188.729 kb on - strand, within GFF161at 188.729 kb on - strand, within GFF161at 188.729 kb on - strand, within GFF161at 188.735 kb on + strand, within GFF161at 188.736 kb on - strand, within GFF161at 188.819 kb on + strand, within GFF161at 188.819 kb on + strand, within GFF161at 188.820 kb on - strand, within GFF161at 188.820 kb on - strand, within GFF161at 188.820 kb on - strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.959 kb on + strand, within GFF161at 188.960 kb on - strand, within GFF161at 188.960 kb on - strand, within GFF161at 188.960 kb on - strand, within GFF161at 188.960 kb on - strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.998 kb on + strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 188.999 kb on - strand, within GFF161at 189.007 kb on + strand, within GFF161at 189.007 kb on + strand, within GFF161at 189.007 kb on + strand, within GFF161at 189.007 kb on + strand, within GFF161at 189.007 kb on + strand, within GFF161at 189.007 kb on + strand, within GFF161at 189.007 kb on + strand, within GFF161at 189.007 kb on + strand, within GFF161at 189.008 kb on - strand, within GFF161at 189.008 kb on - strand, within GFF161at 189.008 kb on - strand, within GFF161at 189.008 kb on - strand, within GFF161at 189.008 kb on - strand, within GFF161at 189.008 kb on - strand, within GFF161at 189.088 kb on + strand, within GFF161at 189.088 kb on + strand, within GFF161at 189.243 kb on + strandat 189.243 kb on + strandat 189.243 kb on + strandat 189.244 kb on - strandat 189.244 kb on - strandat 189.263 kb on + strandat 189.263 kb on + strandat 189.264 kb on - strandat 189.264 kb on - strandat 189.264 kb on - strandat 189.264 kb on - strandat 189.326 kb on + strand, within GFF162at 189.326 kb on + strand, within GFF162at 189.326 kb on + strand, within GFF162at 189.326 kb on + strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.327 kb on - strand, within GFF162at 189.383 kb on + strand, within GFF162at 189.383 kb on + strand, within GFF162at 189.383 kb on + strand, within GFF162at 189.383 kb on + strand, within GFF162at 189.383 kb on + strand, within GFF162at 189.383 kb on + strand, within GFF162at 189.384 kb on - strand, within GFF162at 189.384 kb on - strand, within GFF162at 189.384 kb on - strand, within GFF162at 189.384 kb on - strand, within GFF162at 189.384 kb on - strand, within GFF162at 189.392 kb on + strand, within GFF162at 189.393 kb on - strand, within GFF162at 189.423 kb on + strand, within GFF162at 189.423 kb on + strand, within GFF162at 189.423 kb on + strand, within GFF162at 189.423 kb on + strand, within GFF162at 189.423 kb on + strand, within GFF162at 189.423 kb on + strand, within GFF162at 189.423 kb on + strand, within GFF162at 189.423 kb on + strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.424 kb on - strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.498 kb on + strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.499 kb on - strand, within GFF162at 189.500 kb on + strand, within GFF162at 189.500 kb on + strand, within GFF162at 189.500 kb on + strand, within GFF162at 189.501 kb on - strand, within GFF162at 189.501 kb on - strand, within GFF162at 189.501 kb on - strand, within GFF162at 189.501 kb on - strand, within GFF162at 189.501 kb on - strand, within GFF162

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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187,163 + GFF159 0.31 -0.6
187,163 + GFF159 0.31 -0.8
187,163 + GFF159 0.31 -0.3
187,163 + GFF159 0.31 +0.9
187,163 + GFF159 0.31 +1.7
187,163 + GFF159 0.31 -0.7
187,164 - GFF159 0.31 +0.9
187,303 + GFF159 0.45 -0.3
187,303 + GFF159 0.45 +0.4
187,303 + GFF159 0.45 -0.5
187,303 + GFF159 0.45 +0.1
187,304 - GFF159 0.45 -0.3
187,304 - GFF159 0.45 -0.5
187,304 - GFF159 0.45 -1.0
187,304 - GFF159 0.45 -1.4
187,839 + +0.2
187,839 + +0.1
187,839 + -0.1
187,839 + -0.6
187,839 + +0.8
187,839 + -0.4
187,839 + -0.6
187,839 + -0.1
187,839 + -2.1
187,839 + +0.0
187,839 + +0.0
187,839 + +0.3
187,839 + -1.1
187,839 + -0.4
187,839 + +0.2
187,840 - -1.7
187,840 - -1.4
187,840 - +0.9
187,840 - +0.0
187,840 - +0.4
187,840 - -0.5
187,840 - -0.9
187,840 - +2.3
187,840 - +0.6
187,840 - -1.8
187,840 - -1.0
187,840 - +0.6
187,840 - +0.3
187,840 - -1.6
187,840 - +0.0
187,840 - -0.3
187,840 - -1.3
187,840 - -1.0
187,840 - +1.2
187,840 - -0.6
187,877 - +1.7
187,924 + -0.5
187,924 + -0.7
187,925 - +0.4
187,925 - -1.3
187,925 - -0.1
187,925 - -0.3
187,925 - +1.5
187,925 - -0.2
187,925 - +0.9
188,168 + GFF160 0.34 +2.1
188,169 - GFF160 0.34 -0.7
188,177 + GFF160 0.35 +0.7
188,178 - GFF160 0.35 +0.5
188,264 + GFF160 0.50 -0.9
188,265 - GFF160 0.50 -1.3
188,265 - GFF160 0.50 -0.2
188,402 + GFF160 0.73 +0.9
188,402 + GFF160 0.73 -0.9
188,403 - GFF160 0.73 -0.4
188,403 - GFF160 0.73 +0.7
188,403 - GFF160 0.73 +2.3
188,403 - GFF160 0.73 +0.7
188,574 - -0.1
188,596 + +0.9
188,596 + +0.2
188,596 + +1.0
188,596 + -0.8
188,597 - -0.8
188,597 - -0.3
188,662 + GFF161 0.16 -0.3
188,662 + GFF161 0.16 -0.0
188,662 + GFF161 0.16 -0.8
188,662 + GFF161 0.16 -1.2
188,663 - GFF161 0.16 +0.2
188,663 - GFF161 0.16 +0.1
188,663 - GFF161 0.16 +1.0
188,663 - GFF161 0.16 -0.9
188,728 + GFF161 0.27 -0.7
188,728 + GFF161 0.27 +1.2
188,728 + GFF161 0.27 +0.3
188,728 + GFF161 0.27 -0.4
188,728 + GFF161 0.27 +0.3
188,728 + GFF161 0.27 -0.8
188,728 + GFF161 0.27 +1.3
188,728 + GFF161 0.27 +0.0
188,728 + GFF161 0.27 +0.7
188,729 - GFF161 0.27 -1.1
188,729 - GFF161 0.27 -1.1
188,729 - GFF161 0.27 +0.6
188,729 - GFF161 0.27 -0.5
188,729 - GFF161 0.27 +0.2
188,729 - GFF161 0.27 -0.1
188,729 - GFF161 0.27 -0.8
188,735 + GFF161 0.28 +0.5
188,736 - GFF161 0.28 -0.3
188,819 + GFF161 0.41 -0.2
188,819 + GFF161 0.41 +1.5
188,820 - GFF161 0.41 -0.5
188,820 - GFF161 0.41 +0.2
188,820 - GFF161 0.41 +0.6
188,959 + GFF161 0.64 +0.9
188,959 + GFF161 0.64 +0.2
188,959 + GFF161 0.64 -0.6
188,959 + GFF161 0.64 +2.7
188,959 + GFF161 0.64 +0.3
188,959 + GFF161 0.64 +0.2
188,959 + GFF161 0.64 -1.5
188,959 + GFF161 0.64 -2.0
188,959 + GFF161 0.64 +0.4
188,960 - GFF161 0.64 -1.0
188,960 - GFF161 0.64 +0.2
188,960 - GFF161 0.64 +1.1
188,960 - GFF161 0.64 -0.8
188,998 + GFF161 0.70 +1.3
188,998 + GFF161 0.70 -1.0
188,998 + GFF161 0.70 -0.4
188,998 + GFF161 0.70 -0.1
188,998 + GFF161 0.70 +0.1
188,998 + GFF161 0.70 -0.3
188,998 + GFF161 0.70 +0.7
188,998 + GFF161 0.70 -0.8
188,998 + GFF161 0.70 +0.2
188,998 + GFF161 0.70 -2.3
188,998 + GFF161 0.70 +1.0
188,999 - GFF161 0.70 +0.5
188,999 - GFF161 0.70 -1.0
188,999 - GFF161 0.70 -0.6
188,999 - GFF161 0.70 +0.4
188,999 - GFF161 0.70 -0.3
188,999 - GFF161 0.70 -0.1
188,999 - GFF161 0.70 -1.0
188,999 - GFF161 0.70 -0.3
188,999 - GFF161 0.70 +1.4
188,999 - GFF161 0.70 +0.4
188,999 - GFF161 0.70 -0.7
189,007 + GFF161 0.71 -0.1
189,007 + GFF161 0.71 -0.5
189,007 + GFF161 0.71 +0.9
189,007 + GFF161 0.71 -2.0
189,007 + GFF161 0.71 +0.6
189,007 + GFF161 0.71 -0.1
189,007 + GFF161 0.71 +0.2
189,007 + GFF161 0.71 +1.2
189,008 - GFF161 0.71 -0.4
189,008 - GFF161 0.71 -0.9
189,008 - GFF161 0.71 +0.4
189,008 - GFF161 0.71 -0.4
189,008 - GFF161 0.71 +0.2
189,008 - GFF161 0.71 +1.0
189,088 + GFF161 0.84 -1.2
189,088 + GFF161 0.84 -0.4
189,243 + +0.4
189,243 + -0.5
189,243 + -1.0
189,244 - -0.6
189,244 - +0.0
189,263 + +0.9
189,263 + +0.3
189,264 - -1.0
189,264 - +0.1
189,264 - -1.3
189,264 - -1.7
189,326 + GFF162 0.11 +0.4
189,326 + GFF162 0.11 +0.1
189,326 + GFF162 0.11 +0.7
189,326 + GFF162 0.11 -0.1
189,327 - GFF162 0.11 +2.3
189,327 - GFF162 0.11 +0.2
189,327 - GFF162 0.11 +0.5
189,327 - GFF162 0.11 -0.6
189,327 - GFF162 0.11 -0.9
189,327 - GFF162 0.11 -0.6
189,327 - GFF162 0.11 -0.8
189,327 - GFF162 0.11 +0.2
189,327 - GFF162 0.11 -0.1
189,327 - GFF162 0.11 -0.6
189,327 - GFF162 0.11 +0.4
189,327 - GFF162 0.11 -2.2
189,327 - GFF162 0.11 -0.2
189,327 - GFF162 0.11 -0.3
189,383 + GFF162 0.15 -0.9
189,383 + GFF162 0.15 +2.2
189,383 + GFF162 0.15 -0.3
189,383 + GFF162 0.15 -1.2
189,383 + GFF162 0.15 -1.1
189,383 + GFF162 0.15 +0.2
189,384 - GFF162 0.15 +0.3
189,384 - GFF162 0.15 +0.5
189,384 - GFF162 0.15 +0.7
189,384 - GFF162 0.15 -1.1
189,384 - GFF162 0.15 -0.2
189,392 + GFF162 0.16 -0.2
189,393 - GFF162 0.16 -1.3
189,423 + GFF162 0.19 +0.7
189,423 + GFF162 0.19 -0.1
189,423 + GFF162 0.19 -0.2
189,423 + GFF162 0.19 -1.6
189,423 + GFF162 0.19 -1.5
189,423 + GFF162 0.19 +1.3
189,423 + GFF162 0.19 -0.8
189,423 + GFF162 0.19 +0.3
189,424 - GFF162 0.19 -1.1
189,424 - GFF162 0.19 -0.0
189,424 - GFF162 0.19 -0.3
189,424 - GFF162 0.19 +0.3
189,424 - GFF162 0.19 +0.6
189,424 - GFF162 0.19 -0.3
189,424 - GFF162 0.19 +0.5
189,424 - GFF162 0.19 +0.4
189,424 - GFF162 0.19 -0.6
189,424 - GFF162 0.19 +0.7
189,424 - GFF162 0.19 -0.5
189,498 + GFF162 0.25 -0.0
189,498 + GFF162 0.25 -1.9
189,498 + GFF162 0.25 +1.0
189,498 + GFF162 0.25 -1.3
189,498 + GFF162 0.25 +0.2
189,498 + GFF162 0.25 -0.4
189,498 + GFF162 0.25 +1.0
189,498 + GFF162 0.25 -0.4
189,498 + GFF162 0.25 -0.6
189,498 + GFF162 0.25 +0.1
189,498 + GFF162 0.25 +0.2
189,498 + GFF162 0.25 -0.6
189,498 + GFF162 0.25 -0.3
189,498 + GFF162 0.25 +0.2
189,498 + GFF162 0.25 +0.7
189,499 - GFF162 0.25 -1.6
189,499 - GFF162 0.25 +0.2
189,499 - GFF162 0.25 -0.8
189,499 - GFF162 0.25 +1.7
189,499 - GFF162 0.25 +0.2
189,499 - GFF162 0.25 +0.2
189,499 - GFF162 0.25 -2.4
189,499 - GFF162 0.25 -0.3
189,499 - GFF162 0.25 -0.4
189,499 - GFF162 0.25 +0.3
189,499 - GFF162 0.25 +0.2
189,500 + GFF162 0.25 -0.5
189,500 + GFF162 0.25 +0.0
189,500 + GFF162 0.25 -0.2
189,501 - GFF162 0.25 -1.0
189,501 - GFF162 0.25 +1.7
189,501 - GFF162 0.25 +0.2
189,501 - GFF162 0.25 +0.3
189,501 - GFF162 0.25 +0.1

Or see this region's nucleotide sequence