Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1490 and GFF1491 are separated by 35 nucleotides GFF1491 and GFF1492 are separated by 1 nucleotides GFF1492 and GFF1493 are separated by 8 nucleotides
GFF1490 - Transcriptional regulator, LysR family, at 83,377 to 84,273
GFF1490
GFF1491 - Gluconolactonase, at 84,309 to 85,241
GFF1491
GFF1492 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 85,243 to 86,142
GFF1492
GFF1493 - BUG/TctC family periplasmic protein, at 86,151 to 87,116
GFF1493
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 84.310 kb on + strand at 84.310 kb on + strand at 84.311 kb on - strand at 84.437 kb on + strand, within GFF1491 at 84.511 kb on + strand, within GFF1491 at 84.676 kb on + strand, within GFF1491 at 84.676 kb on + strand, within GFF1491 at 84.676 kb on + strand, within GFF1491 at 84.676 kb on + strand, within GFF1491 at 84.820 kb on + strand, within GFF1491 at 84.944 kb on - strand, within GFF1491 at 84.944 kb on - strand, within GFF1491 at 84.944 kb on - strand, within GFF1491 at 85.003 kb on + strand, within GFF1491 at 85.062 kb on + strand, within GFF1491 at 85.062 kb on + strand, within GFF1491 at 85.063 kb on - strand, within GFF1491 at 85.063 kb on - strand, within GFF1491 at 85.063 kb on - strand, within GFF1491 at 85.075 kb on + strand, within GFF1491 at 85.237 kb on + strand at 85.238 kb on - strand at 85.238 kb on - strand at 85.238 kb on - strand at 85.275 kb on - strand at 85.499 kb on + strand, within GFF1492 at 85.499 kb on + strand, within GFF1492 at 85.499 kb on + strand, within GFF1492 at 85.499 kb on + strand, within GFF1492 at 85.500 kb on - strand, within GFF1492 at 85.500 kb on - strand, within GFF1492 at 85.500 kb on - strand, within GFF1492 at 85.559 kb on + strand, within GFF1492 at 85.559 kb on + strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.560 kb on - strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.684 kb on + strand, within GFF1492 at 85.685 kb on - strand, within GFF1492 at 85.685 kb on - strand, within GFF1492 at 85.685 kb on - strand, within GFF1492 at 85.685 kb on - strand, within GFF1492 at 86.203 kb on + strand at 86.377 kb on + strand, within GFF1493 at 86.386 kb on + strand, within GFF1493 at 86.573 kb on - strand, within GFF1493 at 86.831 kb on - strand, within GFF1493 at 86.845 kb on + strand, within GFF1493 at 86.845 kb on + strand, within GFF1493 at 86.845 kb on + strand, within GFF1493 at 86.857 kb on + strand, within GFF1493
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 84,310 + +0.3 84,310 + -0.9 84,311 - -0.8 84,437 + GFF1491 0.14 -0.2 84,511 + GFF1491 0.22 -0.3 84,676 + GFF1491 0.39 +0.2 84,676 + GFF1491 0.39 -0.7 84,676 + GFF1491 0.39 -0.7 84,676 + GFF1491 0.39 -0.8 84,820 + GFF1491 0.55 +0.0 84,944 - GFF1491 0.68 +0.1 84,944 - GFF1491 0.68 -1.9 84,944 - GFF1491 0.68 -1.4 85,003 + GFF1491 0.74 +0.3 85,062 + GFF1491 0.81 -0.6 85,062 + GFF1491 0.81 -0.8 85,063 - GFF1491 0.81 -0.3 85,063 - GFF1491 0.81 -0.7 85,063 - GFF1491 0.81 -0.6 85,075 + GFF1491 0.82 -0.6 85,237 + +0.1 85,238 - +3.2 85,238 - +0.0 85,238 - -0.4 85,275 - +0.0 85,499 + GFF1492 0.28 +0.3 85,499 + GFF1492 0.28 -0.0 85,499 + GFF1492 0.28 +0.5 85,499 + GFF1492 0.28 -0.0 85,500 - GFF1492 0.29 -1.7 85,500 - GFF1492 0.29 +0.6 85,500 - GFF1492 0.29 +0.6 85,559 + GFF1492 0.35 -0.5 85,559 + GFF1492 0.35 +0.1 85,560 - GFF1492 0.35 -0.1 85,560 - GFF1492 0.35 +0.0 85,560 - GFF1492 0.35 -0.0 85,560 - GFF1492 0.35 -0.1 85,560 - GFF1492 0.35 -0.3 85,684 + GFF1492 0.49 +0.2 85,684 + GFF1492 0.49 -0.7 85,684 + GFF1492 0.49 +0.8 85,684 + GFF1492 0.49 +0.5 85,684 + GFF1492 0.49 -0.2 85,685 - GFF1492 0.49 -0.7 85,685 - GFF1492 0.49 -0.2 85,685 - GFF1492 0.49 -1.0 85,685 - GFF1492 0.49 -0.7 86,203 + +0.2 86,377 + GFF1493 0.23 -1.2 86,386 + GFF1493 0.24 +1.2 86,573 - GFF1493 0.44 +0.9 86,831 - GFF1493 0.70 -0.7 86,845 + GFF1493 0.72 +1.9 86,845 + GFF1493 0.72 -0.1 86,845 + GFF1493 0.72 -0.2 86,857 + GFF1493 0.73 +0.9
Or see this region's nucleotide sequence