Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1443 and GFF1444 overlap by 13 nucleotides GFF1444 and GFF1445 are separated by 10 nucleotides GFF1445 and GFF1446 are separated by 30 nucleotides GFF1446 and GFF1447 are separated by 55 nucleotides GFF1447 and GFF1448 are separated by 248 nucleotides
GFF1443 - Excinuclease ABC subunit A paralog of unknown function, at 33,587 to 36,220
GFF1443
GFF1444 - PRC-barrel, at 36,208 to 36,546
GFF1444
GFF1445 - no description, at 36,557 to 36,670
GFF1445
GFF1446 - no description, at 36,701 to 37,087
GFF1446
GFF1447 - hypothetical protein, at 37,143 to 37,295
GFF1447
GFF1448 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 37,544 to 40,723
GFF1448
Position (kb) 36
37 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 35.453 kb on - strand, within GFF1443 at 35.620 kb on - strand, within GFF1443 at 35.645 kb on + strand, within GFF1443 at 35.645 kb on + strand, within GFF1443 at 35.920 kb on + strand, within GFF1443 at 35.927 kb on + strand, within GFF1443 at 35.927 kb on + strand, within GFF1443 at 35.927 kb on + strand, within GFF1443 at 35.928 kb on - strand, within GFF1443 at 35.928 kb on - strand, within GFF1443 at 35.928 kb on - strand, within GFF1443 at 36.171 kb on - strand at 36.218 kb on + strand at 36.219 kb on - strand at 36.222 kb on - strand at 36.222 kb on - strand at 36.222 kb on - strand at 36.222 kb on - strand at 36.243 kb on - strand, within GFF1444 at 36.279 kb on - strand, within GFF1444 at 36.323 kb on + strand, within GFF1444 at 36.324 kb on - strand, within GFF1444 at 36.324 kb on - strand, within GFF1444 at 36.344 kb on + strand, within GFF1444 at 36.345 kb on - strand, within GFF1444 at 36.419 kb on + strand, within GFF1444 at 36.420 kb on - strand, within GFF1444 at 36.491 kb on + strand, within GFF1444 at 36.566 kb on + strand at 36.660 kb on + strand at 36.660 kb on + strand at 36.661 kb on - strand at 36.661 kb on - strand at 36.668 kb on + strand at 37.162 kb on + strand, within GFF1447 at 37.163 kb on - strand, within GFF1447 at 37.163 kb on - strand, within GFF1447 at 37.388 kb on - strand at 37.388 kb on - strand at 37.519 kb on + strand at 37.519 kb on + strand at 37.519 kb on + strand at 37.519 kb on + strand at 37.520 kb on - strand at 37.543 kb on + strand at 37.543 kb on + strand at 37.543 kb on + strand at 37.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,453 - GFF1443 0.71 +0.2 35,620 - GFF1443 0.77 +0.9 35,645 + GFF1443 0.78 +0.2 35,645 + GFF1443 0.78 -0.4 35,920 + GFF1443 0.89 +0.1 35,927 + GFF1443 0.89 +0.5 35,927 + GFF1443 0.89 -0.4 35,927 + GFF1443 0.89 -0.7 35,928 - GFF1443 0.89 -0.6 35,928 - GFF1443 0.89 +0.0 35,928 - GFF1443 0.89 -0.1 36,171 - -0.6 36,218 + -0.2 36,219 - -0.5 36,222 - -1.0 36,222 - -0.8 36,222 - -0.5 36,222 - +0.3 36,243 - GFF1444 0.10 +3.8 36,279 - GFF1444 0.21 -0.0 36,323 + GFF1444 0.34 -0.6 36,324 - GFF1444 0.34 -1.1 36,324 - GFF1444 0.34 -1.6 36,344 + GFF1444 0.40 -0.1 36,345 - GFF1444 0.40 -1.1 36,419 + GFF1444 0.62 -0.2 36,420 - GFF1444 0.63 -1.0 36,491 + GFF1444 0.83 -0.8 36,566 + +0.1 36,660 + +0.4 36,660 + -1.0 36,661 - -0.6 36,661 - -0.9 36,668 + +0.3 37,162 + GFF1447 0.12 +1.0 37,163 - GFF1447 0.13 -0.6 37,163 - GFF1447 0.13 -0.3 37,388 - -0.7 37,388 - -0.5 37,519 + +0.1 37,519 + -0.2 37,519 + +0.9 37,519 + -0.7 37,520 - +1.2 37,543 + +0.0 37,543 + +0.2 37,543 + -0.6 37,544 - -0.9
Or see this region's nucleotide sequence