Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1309 and GFF1310 overlap by 4 nucleotides GFF1310 and GFF1311 are separated by 160 nucleotides GFF1311 and GFF1312 are separated by 135 nucleotides
GFF1309 - Phosphoglucomutase (EC 5.4.2.2), at 638,886 to 640,541
GFF1309
GFF1310 - hypothetical protein, at 640,538 to 641,215
GFF1310
GFF1311 - no description, at 641,376 to 641,711
GFF1311
GFF1312 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 641,847 to 643,247
GFF1312
Position (kb) 640
641
642 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 639.556 kb on + strand, within GFF1309 at 639.557 kb on - strand, within GFF1309 at 639.781 kb on + strand, within GFF1309 at 639.782 kb on - strand, within GFF1309 at 639.782 kb on - strand, within GFF1309 at 639.782 kb on - strand, within GFF1309 at 639.806 kb on - strand, within GFF1309 at 639.806 kb on - strand, within GFF1309 at 639.901 kb on + strand, within GFF1309 at 639.901 kb on + strand, within GFF1309 at 639.901 kb on + strand, within GFF1309 at 639.901 kb on + strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.902 kb on - strand, within GFF1309 at 639.913 kb on + strand, within GFF1309 at 639.913 kb on + strand, within GFF1309 at 639.914 kb on - strand, within GFF1309 at 640.063 kb on + strand, within GFF1309 at 640.063 kb on + strand, within GFF1309 at 640.063 kb on + strand, within GFF1309 at 640.063 kb on + strand, within GFF1309 at 640.063 kb on + strand, within GFF1309 at 640.064 kb on - strand, within GFF1309 at 640.064 kb on - strand, within GFF1309 at 640.064 kb on - strand, within GFF1309 at 640.064 kb on - strand, within GFF1309 at 640.064 kb on - strand, within GFF1309 at 640.064 kb on - strand, within GFF1309 at 640.148 kb on - strand, within GFF1309 at 640.186 kb on + strand, within GFF1309 at 640.186 kb on + strand, within GFF1309 at 640.187 kb on - strand, within GFF1309 at 640.187 kb on - strand, within GFF1309 at 640.187 kb on - strand, within GFF1309 at 640.456 kb on + strand at 640.456 kb on + strand at 640.456 kb on + strand at 640.456 kb on + strand at 640.456 kb on + strand at 640.456 kb on + strand at 640.457 kb on - strand at 640.457 kb on - strand at 640.457 kb on - strand at 640.457 kb on - strand at 640.457 kb on - strand at 640.459 kb on + strand at 640.459 kb on + strand at 640.460 kb on - strand at 640.605 kb on + strand at 640.605 kb on + strand at 640.605 kb on + strand at 640.635 kb on + strand, within GFF1310 at 640.635 kb on + strand, within GFF1310 at 640.635 kb on + strand, within GFF1310 at 640.635 kb on + strand, within GFF1310 at 640.635 kb on + strand, within GFF1310 at 640.635 kb on + strand, within GFF1310 at 640.636 kb on - strand, within GFF1310 at 640.636 kb on - strand, within GFF1310 at 640.636 kb on - strand, within GFF1310 at 640.636 kb on - strand, within GFF1310 at 640.636 kb on - strand, within GFF1310 at 640.636 kb on - strand, within GFF1310 at 640.728 kb on + strand, within GFF1310 at 640.728 kb on + strand, within GFF1310 at 640.728 kb on + strand, within GFF1310 at 640.729 kb on - strand, within GFF1310 at 640.729 kb on - strand, within GFF1310 at 640.729 kb on - strand, within GFF1310 at 640.729 kb on - strand, within GFF1310 at 640.729 kb on - strand, within GFF1310 at 640.785 kb on + strand, within GFF1310 at 640.785 kb on + strand, within GFF1310 at 640.785 kb on + strand, within GFF1310 at 640.785 kb on + strand, within GFF1310 at 640.786 kb on - strand, within GFF1310 at 640.786 kb on - strand, within GFF1310 at 640.786 kb on - strand, within GFF1310 at 640.786 kb on - strand, within GFF1310 at 640.871 kb on + strand, within GFF1310 at 640.871 kb on + strand, within GFF1310 at 640.871 kb on + strand, within GFF1310 at 640.872 kb on - strand, within GFF1310 at 640.872 kb on - strand, within GFF1310 at 640.872 kb on - strand, within GFF1310 at 640.872 kb on - strand, within GFF1310 at 640.872 kb on - strand, within GFF1310 at 640.872 kb on - strand, within GFF1310 at 641.020 kb on - strand, within GFF1310 at 641.040 kb on + strand, within GFF1310 at 641.041 kb on - strand, within GFF1310 at 641.041 kb on - strand, within GFF1310 at 641.049 kb on + strand, within GFF1310 at 641.050 kb on - strand, within GFF1310 at 641.050 kb on - strand, within GFF1310 at 641.050 kb on - strand, within GFF1310 at 641.261 kb on + strand at 641.261 kb on + strand at 641.261 kb on + strand at 641.261 kb on + strand at 641.261 kb on + strand at 641.262 kb on - strand at 641.262 kb on - strand at 641.262 kb on - strand at 641.262 kb on - strand at 641.262 kb on - strand at 641.262 kb on - strand at 641.262 kb on - strand at 641.262 kb on - strand at 641.262 kb on - strand at 641.300 kb on + strand at 641.300 kb on + strand at 641.300 kb on + strand at 641.300 kb on + strand at 641.301 kb on - strand at 641.301 kb on - strand at 641.301 kb on - strand at 641.301 kb on - strand at 641.301 kb on - strand at 641.301 kb on - strand at 641.327 kb on + strand at 641.327 kb on + strand at 641.327 kb on + strand at 641.327 kb on + strand at 641.328 kb on - strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.381 kb on + strand at 641.382 kb on - strand at 641.382 kb on - strand at 641.382 kb on - strand at 641.382 kb on - strand at 641.382 kb on - strand at 641.382 kb on - strand at 641.382 kb on - strand at 641.382 kb on - strand at 641.382 kb on - strand at 641.398 kb on - strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.700 kb on + strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.701 kb on - strand at 641.710 kb on - strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.817 kb on + strand at 641.818 kb on - strand at 641.818 kb on - strand at 641.818 kb on - strand at 641.818 kb on - strand at 641.818 kb on - strand at 641.818 kb on - strand at 641.818 kb on - strand at 641.818 kb on - strand at 641.886 kb on + strand at 641.886 kb on + strand at 641.886 kb on + strand at 641.887 kb on - strand at 641.887 kb on - strand at 641.979 kb on + strand at 641.979 kb on + strand at 641.980 kb on - strand at 641.980 kb on - strand at 641.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 639,556 + GFF1309 0.40 -0.2 639,557 - GFF1309 0.41 -0.1 639,781 + GFF1309 0.54 +0.7 639,782 - GFF1309 0.54 +0.0 639,782 - GFF1309 0.54 -0.1 639,782 - GFF1309 0.54 -1.2 639,806 - GFF1309 0.56 +0.2 639,806 - GFF1309 0.56 +0.5 639,901 + GFF1309 0.61 -1.6 639,901 + GFF1309 0.61 -1.2 639,901 + GFF1309 0.61 +0.3 639,901 + GFF1309 0.61 +0.5 639,902 - GFF1309 0.61 -0.4 639,902 - GFF1309 0.61 -0.1 639,902 - GFF1309 0.61 -0.6 639,902 - GFF1309 0.61 +0.1 639,902 - GFF1309 0.61 +0.7 639,902 - GFF1309 0.61 +0.0 639,902 - GFF1309 0.61 +1.0 639,902 - GFF1309 0.61 -0.6 639,902 - GFF1309 0.61 -1.5 639,913 + GFF1309 0.62 -0.9 639,913 + GFF1309 0.62 -0.6 639,914 - GFF1309 0.62 -0.1 640,063 + GFF1309 0.71 +0.3 640,063 + GFF1309 0.71 +0.7 640,063 + GFF1309 0.71 -0.9 640,063 + GFF1309 0.71 -0.6 640,063 + GFF1309 0.71 -1.1 640,064 - GFF1309 0.71 +1.7 640,064 - GFF1309 0.71 -0.6 640,064 - GFF1309 0.71 +0.5 640,064 - GFF1309 0.71 -0.5 640,064 - GFF1309 0.71 -0.9 640,064 - GFF1309 0.71 +0.0 640,148 - GFF1309 0.76 -0.7 640,186 + GFF1309 0.79 -0.6 640,186 + GFF1309 0.79 -0.7 640,187 - GFF1309 0.79 -0.8 640,187 - GFF1309 0.79 -0.1 640,187 - GFF1309 0.79 +0.4 640,456 + +1.1 640,456 + +1.0 640,456 + +0.7 640,456 + +0.7 640,456 + -1.0 640,456 + +0.5 640,457 - -2.6 640,457 - +0.1 640,457 - +0.2 640,457 - -0.6 640,457 - -0.3 640,459 + -1.1 640,459 + -1.0 640,460 - -0.2 640,605 + -2.0 640,605 + -1.2 640,605 + +0.6 640,635 + GFF1310 0.14 +0.1 640,635 + GFF1310 0.14 -1.1 640,635 + GFF1310 0.14 +0.2 640,635 + GFF1310 0.14 -0.5 640,635 + GFF1310 0.14 +0.5 640,635 + GFF1310 0.14 -1.3 640,636 - GFF1310 0.14 +0.1 640,636 - GFF1310 0.14 +1.3 640,636 - GFF1310 0.14 -0.3 640,636 - GFF1310 0.14 -2.3 640,636 - GFF1310 0.14 -0.5 640,636 - GFF1310 0.14 -0.1 640,728 + GFF1310 0.28 -0.0 640,728 + GFF1310 0.28 -2.0 640,728 + GFF1310 0.28 -2.2 640,729 - GFF1310 0.28 -2.2 640,729 - GFF1310 0.28 +1.3 640,729 - GFF1310 0.28 -0.9 640,729 - GFF1310 0.28 -0.6 640,729 - GFF1310 0.28 -0.2 640,785 + GFF1310 0.36 -0.7 640,785 + GFF1310 0.36 -0.1 640,785 + GFF1310 0.36 -1.6 640,785 + GFF1310 0.36 -0.4 640,786 - GFF1310 0.37 +0.1 640,786 - GFF1310 0.37 -0.4 640,786 - GFF1310 0.37 -0.7 640,786 - GFF1310 0.37 +0.7 640,871 + GFF1310 0.49 +0.5 640,871 + GFF1310 0.49 -1.0 640,871 + GFF1310 0.49 +0.0 640,872 - GFF1310 0.49 -0.5 640,872 - GFF1310 0.49 -0.0 640,872 - GFF1310 0.49 -0.4 640,872 - GFF1310 0.49 -0.3 640,872 - GFF1310 0.49 +1.7 640,872 - GFF1310 0.49 -0.6 641,020 - GFF1310 0.71 -0.5 641,040 + GFF1310 0.74 -0.6 641,041 - GFF1310 0.74 -0.7 641,041 - GFF1310 0.74 +0.7 641,049 + GFF1310 0.75 +0.3 641,050 - GFF1310 0.76 -2.1 641,050 - GFF1310 0.76 +0.2 641,050 - GFF1310 0.76 -1.9 641,261 + -0.6 641,261 + -0.9 641,261 + +1.1 641,261 + -0.3 641,261 + -0.4 641,262 - -0.3 641,262 - +1.3 641,262 - +0.2 641,262 - -0.3 641,262 - -0.2 641,262 - +0.5 641,262 - -1.8 641,262 - -0.0 641,262 - +3.3 641,300 + -0.4 641,300 + +0.1 641,300 + -0.2 641,300 + -0.8 641,301 - +0.9 641,301 - -0.4 641,301 - +0.4 641,301 - -0.6 641,301 - +2.8 641,301 - -0.5 641,327 + -0.8 641,327 + -0.2 641,327 + -1.3 641,327 + +0.4 641,328 - +0.9 641,381 + +0.7 641,381 + +0.7 641,381 + +0.5 641,381 + +0.2 641,381 + -0.4 641,381 + -0.3 641,381 + +0.1 641,381 + -1.3 641,381 + -0.3 641,381 + +0.8 641,381 + -0.5 641,381 + +0.6 641,381 + -0.4 641,381 + -0.2 641,382 - +0.2 641,382 - -1.5 641,382 - +1.7 641,382 - +0.5 641,382 - -0.3 641,382 - -0.3 641,382 - -0.6 641,382 - +0.0 641,382 - -0.7 641,398 - -0.3 641,700 + -1.5 641,700 + +0.0 641,700 + -0.7 641,700 + -0.1 641,700 + +1.4 641,700 + -0.4 641,700 + -0.4 641,700 + -1.3 641,700 + -0.9 641,700 + -0.4 641,701 - +0.1 641,701 - -0.3 641,701 - -0.8 641,701 - -0.7 641,701 - +1.3 641,701 - +0.7 641,701 - -0.2 641,701 - -0.3 641,701 - -1.0 641,701 - +0.1 641,701 - -0.3 641,701 - +0.1 641,710 - -0.3 641,817 + -0.3 641,817 + -0.0 641,817 + +0.2 641,817 + -1.1 641,817 + -1.0 641,817 + +2.4 641,817 + -0.9 641,817 + -1.2 641,817 + -0.4 641,817 + -0.3 641,817 + +0.1 641,817 + -1.5 641,817 + +0.3 641,817 + +0.1 641,817 + +0.2 641,817 + -0.3 641,817 + -1.0 641,817 + -0.4 641,817 + +0.4 641,817 + -0.7 641,817 + -0.4 641,818 - +0.7 641,818 - -0.4 641,818 - +0.1 641,818 - -0.9 641,818 - -0.3 641,818 - +0.5 641,818 - +1.5 641,818 - +0.9 641,886 + -0.2 641,886 + +1.1 641,886 + -0.9 641,887 - +0.8 641,887 - -1.1 641,979 + -0.4 641,979 + -1.8 641,980 - -0.5 641,980 - -0.8 641,980 - -1.0
Or see this region's nucleotide sequence