Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1305 and GFF1306 are separated by 38 nucleotides GFF1306 and GFF1307 are separated by 106 nucleotides
GFF1305 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 635,786 to 636,841
GFF1305
GFF1306 - no description, at 636,880 to 637,005
GFF1306
GFF1307 - Homoserine dehydrogenase (EC 1.1.1.3), at 637,112 to 638,476
GFF1307
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1 at 636.335 kb on + strand, within GFF1305 at 636.335 kb on + strand, within GFF1305 at 636.336 kb on - strand, within GFF1305 at 636.336 kb on - strand, within GFF1305 at 636.336 kb on - strand, within GFF1305 at 636.476 kb on + strand, within GFF1305 at 636.476 kb on + strand, within GFF1305 at 636.476 kb on + strand, within GFF1305 at 636.477 kb on - strand, within GFF1305 at 636.737 kb on + strand at 636.737 kb on + strand at 636.737 kb on + strand at 636.738 kb on - strand at 636.738 kb on - strand at 636.749 kb on + strand at 636.750 kb on - strand at 636.770 kb on + strand at 636.770 kb on + strand at 636.800 kb on + strand at 636.801 kb on - strand at 636.864 kb on + strand at 636.987 kb on + strand, within GFF1306 at 636.987 kb on + strand, within GFF1306 at 636.987 kb on + strand, within GFF1306 at 636.988 kb on - strand, within GFF1306 at 636.988 kb on - strand, within GFF1306 at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.041 kb on + strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.042 kb on - strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.115 kb on + strand at 637.116 kb on - strand at 637.116 kb on - strand at 637.116 kb on - strand at 637.116 kb on - strand at 637.116 kb on - strand at 637.174 kb on + strand at 637.174 kb on + strand at 637.175 kb on - strand at 637.325 kb on - strand, within GFF1307 at 637.325 kb on - strand, within GFF1307 at 637.551 kb on - strand, within GFF1307 at 637.551 kb on - strand, within GFF1307 at 637.551 kb on - strand, within GFF1307
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 636,335 + GFF1305 0.52 -0.4 636,335 + GFF1305 0.52 +0.4 636,336 - GFF1305 0.52 -0.8 636,336 - GFF1305 0.52 -0.0 636,336 - GFF1305 0.52 +0.0 636,476 + GFF1305 0.65 +1.7 636,476 + GFF1305 0.65 +0.7 636,476 + GFF1305 0.65 -1.1 636,477 - GFF1305 0.65 -0.6 636,737 + -0.8 636,737 + +0.1 636,737 + -0.2 636,738 - +0.7 636,738 - -0.4 636,749 + -1.0 636,750 - -1.7 636,770 + -0.6 636,770 + +0.4 636,800 + -1.5 636,801 - -1.1 636,864 + +0.0 636,987 + GFF1306 0.85 -0.3 636,987 + GFF1306 0.85 +1.1 636,987 + GFF1306 0.85 -1.3 636,988 - GFF1306 0.86 -0.3 636,988 - GFF1306 0.86 -1.8 637,041 + -0.6 637,041 + -1.5 637,041 + -1.1 637,041 + +0.4 637,041 + -0.8 637,041 + +1.7 637,041 + -0.5 637,042 - -0.0 637,042 - -0.4 637,042 - +0.7 637,042 - -1.3 637,042 - +1.4 637,042 - +0.7 637,115 + -0.3 637,115 + -0.5 637,115 + -0.6 637,115 + +1.1 637,115 + -0.1 637,115 + +0.4 637,115 + -0.5 637,116 - -0.3 637,116 - -0.5 637,116 - -0.3 637,116 - -0.4 637,116 - +0.6 637,174 + -0.8 637,174 + -0.5 637,175 - -1.1 637,325 - GFF1307 0.16 -0.1 637,325 - GFF1307 0.16 +0.5 637,551 - GFF1307 0.32 +0.5 637,551 - GFF1307 0.32 -0.3 637,551 - GFF1307 0.32 +0.5
Or see this region's nucleotide sequence