Strain Fitness in Variovorax sp. SCN45 around GFF1285

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1284 and GFF1285 are separated by 114 nucleotidesGFF1285 and GFF1286 are separated by 21 nucleotidesGFF1286 and GFF1287 overlap by 4 nucleotides GFF1284 - Transcriptional regulator, LysR family, at 612,029 to 612,943 GFF1284 GFF1285 - Alkyl hydroperoxide reductase subunit C-like protein, at 613,058 to 613,699 GFF1285 GFF1286 - FIG00932541: hypothetical protein, at 613,721 to 614,296 GFF1286 GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309 GFF1287 Position (kb) 613 614Strain fitness (log2 ratio) -2 -1 0 1at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.222 kb on - strand, within GFF1284at 612.423 kb on + strand, within GFF1284at 612.512 kb on + strand, within GFF1284at 612.513 kb on - strand, within GFF1284at 612.693 kb on - strand, within GFF1284at 612.693 kb on - strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.977 kb on + strandat 613.130 kb on + strand, within GFF1285at 613.130 kb on + strand, within GFF1285at 613.130 kb on + strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.475 kb on + strand, within GFF1285at 613.476 kb on - strand, within GFF1285at 613.476 kb on - strand, within GFF1285at 613.667 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 614.123 kb on + strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.124 kb on - strand, within GFF1286at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.398 kb on + strand, within GFF1287at 614.420 kb on - strand, within GFF1287at 614.428 kb on + strand, within GFF1287at 614.428 kb on + strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.429 kb on - strand, within GFF1287at 614.452 kb on + strand, within GFF1287at 614.452 kb on + strand, within GFF1287at 614.453 kb on - strand, within GFF1287at 614.453 kb on - strand, within GFF1287at 614.453 kb on - strand, within GFF1287

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
612,221 + GFF1284 0.21 -0.1
612,221 + GFF1284 0.21 +0.4
612,221 + GFF1284 0.21 +0.7
612,221 + GFF1284 0.21 +0.1
612,221 + GFF1284 0.21 -0.3
612,221 + GFF1284 0.21 +0.9
612,221 + GFF1284 0.21 -0.1
612,221 + GFF1284 0.21 +0.0
612,222 - GFF1284 0.21 -0.9
612,423 + GFF1284 0.43 -0.1
612,512 + GFF1284 0.53 -0.2
612,513 - GFF1284 0.53 +0.2
612,693 - GFF1284 0.73 +0.6
612,693 - GFF1284 0.73 -0.4
612,764 + GFF1284 0.80 -0.2
612,764 + GFF1284 0.80 -0.0
612,764 + GFF1284 0.80 -0.6
612,764 + GFF1284 0.80 +0.4
612,764 + GFF1284 0.80 -0.8
612,764 + GFF1284 0.80 -1.4
612,764 + GFF1284 0.80 -0.3
612,765 - GFF1284 0.80 -0.6
612,765 - GFF1284 0.80 -0.3
612,765 - GFF1284 0.80 +0.6
612,765 - GFF1284 0.80 +0.3
612,765 - GFF1284 0.80 -0.4
612,765 - GFF1284 0.80 +0.0
612,765 - GFF1284 0.80 -1.1
612,765 - GFF1284 0.80 -0.6
612,977 + +0.7
613,130 + GFF1285 0.11 -0.8
613,130 + GFF1285 0.11 +0.0
613,130 + GFF1285 0.11 +0.5
613,131 - GFF1285 0.11 -0.5
613,131 - GFF1285 0.11 +0.1
613,131 - GFF1285 0.11 -2.0
613,131 - GFF1285 0.11 -0.1
613,382 + GFF1285 0.50 -2.3
613,382 + GFF1285 0.50 -0.4
613,382 + GFF1285 0.50 +0.0
613,382 + GFF1285 0.50 -0.9
613,382 + GFF1285 0.50 -0.4
613,383 - GFF1285 0.51 -1.1
613,383 - GFF1285 0.51 -0.4
613,383 - GFF1285 0.51 +1.7
613,383 - GFF1285 0.51 +1.7
613,433 + GFF1285 0.58 -0.3
613,433 + GFF1285 0.58 +0.8
613,433 + GFF1285 0.58 -1.4
613,434 - GFF1285 0.59 -0.6
613,434 - GFF1285 0.59 -1.3
613,434 - GFF1285 0.59 +0.5
613,475 + GFF1285 0.65 -0.2
613,476 - GFF1285 0.65 +0.1
613,476 - GFF1285 0.65 +0.7
613,667 + +0.2
613,697 + -0.6
613,697 + +0.2
613,697 + +0.0
613,697 + -1.4
613,697 + +0.1
613,697 + -1.6
613,698 - -0.8
613,698 - -0.5
613,698 - +0.5
613,698 - +0.1
613,698 - -1.1
613,698 - +0.0
613,698 - -1.5
613,698 - +0.2
613,698 - -0.5
613,698 - -1.8
613,698 - +0.3
614,123 + GFF1286 0.70 +0.3
614,124 - GFF1286 0.70 -0.3
614,124 - GFF1286 0.70 -0.4
614,124 - GFF1286 0.70 -0.2
614,124 - GFF1286 0.70 -0.5
614,124 - GFF1286 0.70 -0.3
614,124 - GFF1286 0.70 -0.1
614,124 - GFF1286 0.70 -1.0
614,124 - GFF1286 0.70 +0.8
614,398 + GFF1287 0.10 +0.8
614,398 + GFF1287 0.10 -0.8
614,398 + GFF1287 0.10 +0.2
614,398 + GFF1287 0.10 -0.1
614,420 - GFF1287 0.12 -1.5
614,428 + GFF1287 0.13 +0.3
614,428 + GFF1287 0.13 +0.1
614,429 - GFF1287 0.13 -0.4
614,429 - GFF1287 0.13 -0.6
614,429 - GFF1287 0.13 +1.4
614,452 + GFF1287 0.16 -0.7
614,452 + GFF1287 0.16 -0.9
614,453 - GFF1287 0.16 -1.1
614,453 - GFF1287 0.16 -0.3
614,453 - GFF1287 0.16 -0.9

Or see this region's nucleotide sequence