Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1266 and GFF1267 are separated by 4 nucleotides GFF1267 and GFF1268 are separated by 117 nucleotides
GFF1266 - Cysteine desulfurase (EC 2.8.1.7), at 581,448 to 583,253
GFF1266
GFF1267 - Probable lipoprotein signal peptide, at 583,258 to 584,262
GFF1267
GFF1268 - FIG022199: FAD-binding protein, at 584,380 to 585,738
GFF1268
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 582.820 kb on + strand, within GFF1266 at 582.820 kb on + strand, within GFF1266 at 582.821 kb on - strand, within GFF1266 at 582.821 kb on - strand, within GFF1266 at 582.900 kb on + strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.957 kb on + strand, within GFF1266 at 582.958 kb on - strand, within GFF1266 at 582.958 kb on - strand, within GFF1266 at 583.051 kb on - strand, within GFF1266 at 583.179 kb on + strand at 583.179 kb on + strand at 583.180 kb on - strand at 583.782 kb on - strand, within GFF1267 at 583.997 kb on + strand, within GFF1267 at 584.298 kb on - strand at 584.298 kb on - strand at 584.340 kb on - strand at 584.355 kb on + strand at 584.356 kb on - strand at 584.804 kb on + strand, within GFF1268 at 584.804 kb on + strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.157 kb on + strand, within GFF1268
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 582,820 + GFF1266 0.76 +0.2 582,820 + GFF1266 0.76 -0.9 582,821 - GFF1266 0.76 -0.4 582,821 - GFF1266 0.76 -0.0 582,900 + GFF1266 0.80 +1.5 582,901 - GFF1266 0.80 -0.3 582,901 - GFF1266 0.80 +1.1 582,901 - GFF1266 0.80 -0.5 582,957 + GFF1266 0.84 -0.3 582,958 - GFF1266 0.84 -0.0 582,958 - GFF1266 0.84 +1.1 583,051 - GFF1266 0.89 -0.0 583,179 + -0.1 583,179 + -0.9 583,180 - -0.3 583,782 - GFF1267 0.52 -0.2 583,997 + GFF1267 0.74 +4.3 584,298 - -0.9 584,298 - -1.1 584,340 - -0.7 584,355 + -1.0 584,356 - +0.3 584,804 + GFF1268 0.31 -0.3 584,804 + GFF1268 0.31 -0.5 585,116 - GFF1268 0.54 -0.2 585,116 - GFF1268 0.54 -2.1 585,116 - GFF1268 0.54 -0.3 585,118 + GFF1268 0.54 -1.7 585,118 + GFF1268 0.54 +0.9 585,118 + GFF1268 0.54 +0.2 585,157 + GFF1268 0.57 +1.3
Or see this region's nucleotide sequence